RNA id: TU136067


Basic Information

Item Value
RNA id TU136067
length 1514
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id AMCG00006292
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1344516 ~ 1637731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTGTCTTGCGCTTTGTCATTTATAGATAGAGTCCCTTCTGATCAAGCCGAGGAGAGGCCTGAGTCAGTTTATCACAGCCCTGAAGAAATCATGGTAAAGCAGCACAGTGGTTTCTGTCTGATTGTGTCTGATTATAACTGGAGGCTTCTCTGAAACCTCCTCTCTCTATCAATGCAGTTACAAAGTTCAGCCACTCGGTTTGTCTGTAGGAaccccgctctctctctgtctactGTCCTATTGTGTGAATGGTACTCAGGGATTCTCTCATCTCATATGTCAATATGtgcatttctgtctgtctctgtaattataatacattgagCATACGTTCCTGCTTAGGCTCTATGCACAGCTATAGTGTGGAAAGGGTTAGTGTTGCGCAGCCGAGTGGCACTGTCCCGCAGACAGTCACAAAAAACAGGGAAGGACTCAGGGTTCAAGCTATTTCCTATGGCAGTGTTGTGTGCAGAGCAATAATAACAGAGCCATGATCCTTAGTTTACTTGATGaggattaaaaatgttttcacaaaaaaaatacatatgcagCAGAGTAATTCAAAACAGGGGAAACAGTCACGAACCTCAGAACACAAAGTGTTGTGATTGatattataaacaaaactaaatagaGTGTATAGTGTAAAAACCCATAAGTGCAAAAtggtctcttaattattcCAGAGCTACATTTATAGACAgagggagaaacagagagagaggaattgcttttatactttcttttttaatgctgcatatttaaaattatcttatattattataaacaggCTGGCCAGTTACAAAACttctgaaatatattgttttagtctgtgcactttaaaaacaaagtctATTTTTCCTCAGGTCATAATGAATATCCTATTTTGAGACTTGTTTTTCTAGGCATTAACAGCCATTGCTGAAGAAATGTAAATCAGATCTTGTACCCCAATACTGCTGTTTAAAAGCCTATATCTACAGTGCTGACCAGCAATGCAAAGCTGTGTTCTTCAGATCAGATCTTTTGGGGACAGAGGGCTTCTCATACCGATTCCACCTTCAGCTgataattagttaatttaaataattattcacaGAACTAAACCAATGGAAGGGAAACTCTCTGTTAGGTCCTCAATGTGGGTAATTACATTGTCTTAATTAGATaaacctgctggactggagCCCTCTGTGACTGGATTAGAATCACTACTGTGATGAAAACACTTCTTGGCTTCTAgaatctgaatttgaattgatgGAAAAACCTGTCTTCAGTCTGTTTTCtatgtttctattttctttaataaatctGTATTATATTGCACTTTGGACTAAATGTGTTCTTAAAGTTGTGTggagcatttttttaataacactaACCGCTCAATGTCCAGTGTCTGTATTAACTTGGGTATTATATGTTATTGTCACCTTTTCACAATAGAGAAATCGAAGAAACGCTTGAAAAGGTCTCTTGcagttggagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136060 lncRNA downstream 12472 1328802 ~ 1332044 (-) True G108752
TU136056 lncRNA downstream 23303 1320698 ~ 1321213 (-) True G108750
TU135963 lncRNA downstream 37636 1292038 ~ 1306880 (-) True G108682
TU136026 lncRNA downstream 131125 1211290 ~ 1213391 (-) False AMCG00006274
TU136018 lncRNA downstream 142835 1180582 ~ 1201681 (-) False G108717
TU136073 lncRNA upstream 3244 1350085 ~ 1397331 (-) True G108756
TU136074 lncRNA upstream 12251 1359092 ~ 1359504 (-) False AMCG00006279
TU136077 lncRNA upstream 58552 1405393 ~ 1409747 (-) True G108760
TU136089 lncRNA upstream 157357 1504198 ~ 1560390 (-) True G108770
TU136091 lncRNA upstream 190103 1536944 ~ 1542361 (-) True G108772
AMCG00006277 mRNA downstream 2851 1338157 ~ 1341665 (-) False AMCG00006277
AMCG00006278 mRNA downstream 43873 1298837 ~ 1300643 (-) True AMCG00006278
AMCG00006280 mRNA downstream 46546 1293396 ~ 1297970 (-) True AMCG00006280
AMCG00006273 mRNA downstream 82937 1248142 ~ 1261579 (-) True AMCG00006273
AMCG00006274 mRNA downstream 128361 1211286 ~ 1216155 (-) True AMCG00006274
AMCG00006279 mRNA upstream 11556 1358397 ~ 1371414 (-) True AMCG00006279
AMCG00006284 mRNA upstream 128036 1474877 ~ 1493970 (-) True AMCG00006284
AMCG00006285 mRNA upstream 147519 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006283 mRNA upstream 203602 1550443 ~ 1555554 (-) True AMCG00006283
AMCG00006291 mRNA upstream 248831 1595672 ~ 1599457 (-) True AMCG00006291
TU136062 other downstream 3071 1337187 ~ 1341445 (-) True AMCG00006277
TU136027 other downstream 128332 1215225 ~ 1216184 (-) False AMCG00006274
TU136000 other downstream 209826 1126562 ~ 1134690 (-) True G108708
TU135631 other downstream 604227 737260 ~ 740289 (-) False AMCG00006245
TU135628 other downstream 609106 731441 ~ 735410 (-) False AMCG00006245
TU136068 other upstream 3644 1350485 ~ 1352941 (-) False G108755
TU136071 other upstream 3644 1350485 ~ 1554664 (-) True G108755
TU136076 other upstream 21241 1368082 ~ 1510540 (-) False AMCG00006279
TU136085 other upstream 126637 1473478 ~ 1474950 (-) False AMCG00006284
TU136106 other upstream 299639 1646480 ~ 1660004 (-) True G108784

Expression Profile