RNA id: AMCG00006294



Basic Information


Item Value
RNA id AMCG00006294
length 933
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00006294
representative False

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1735932 ~ 1741336 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgCCTGTCTGTTTTGTGGTCTATCACTGTTCCTCTCTCCCCAGCTCTCTCCAGTGCCGTGTCAGTGACAGTATCAGTGACAGTGGGGGACTCTGTGACTCTGCCCTGTGATGGATCagcgcacacagacacagtccaGATGTACTGGCAGACTCCAGGcaggctggtgtgtgtgtccagCTCTGGGAGATGTGAGGCTCAGACAGGCTTTGAGGGCAGAGTGGAGTTTGCAGGAGCCGTGGAGTCAGGCGACTTCTCCCTGACCATTCACAGCACCCAGCTCTCTGATGAAGACCTGTACGAGTGTTTCAGGGTCAGTGCAGCAGGACAGAGCATGTTCCTTGGGAAAGTACGTGTCAGGGTCTTGAGCCGTGAGGAGAACACCTCTGTCTCCTATGGGCAGCCCCTGAGCCTCCGTCTGTACAGCAGGGCAGCTGTGACAGTGCAGTTTAACCCTGCGGGCGCTGGAGCCTCTCTCCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCATATGGGCCCCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGAACTTCACTGACCAGGGCTCCTACACAGTGCTCGACTCCCAGAGCAGAGCGACCATCAGCACTGTGAACGTCACTGTGACAGGTAGGACAGgggcttggggggggggggaggtagACTCTGTTGTCTGGGGCGCTGTGGTTTGCGCTGTGGTTTGCGCTGTGGTTGGCTTCACTGTGATCCTGTTGATCGTGCTGATAGTGTTTGTATGTCGGAGGATTAGAGACAGTGCTGGGGCTGCAGCGATGGAGATGGGGGAGATGAGGAATGGAGCGCCGCACAACAATGAGAACGAACGGACAGAGGAGGGTGTGATCATGCCTCTGATGGCCGAGGCCTCTGTTTGCAGGGGACCTGCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU135890 lncRNA upstream 59862 1676666 ~ 1678507 (+) False G108626
TU135905 lncRNA upstream 86910 1651055 ~ 1651459 (+) True G108632
TU135839 lncRNA upstream 183704 1352818 ~ 1554665 (+) True G108587
TU135894 lncRNA downstream 67221 1808557 ~ 1814610 (+) False G108626
TU136167 lncRNA downstream 148191 1889527 ~ 1890035 (+) True G108831
TU136168 lncRNA downstream 149700 1891036 ~ 1892425 (+) True G108832
TU136169 lncRNA downstream 151527 1892863 ~ 1893487 (+) True G108833
TU136184 lncRNA downstream 210878 1952214 ~ 1953042 (+) True G108847
AMCG00006295 mRNA upstream 4058 1729809 ~ 1734311 (+) True AMCG00006295
AMCG00006293 mRNA upstream 17259 1715483 ~ 1721110 (+) True AMCG00006293
AMCG00006289 mRNA upstream 76526 1660638 ~ 1661843 (+) True AMCG00006289
AMCG00006288 mRNA upstream 91239 1638059 ~ 1647130 (+) True AMCG00006288
AMCG00006286 mRNA upstream 163551 1573128 ~ 1574818 (+) True AMCG00006286
AMCG00006296 mRNA downstream 1706 1743042 ~ 1752407 (+) True AMCG00006296
AMCG00006297 mRNA downstream 11433 1752769 ~ 1753029 (+) True AMCG00006297
AMCG00006302 mRNA downstream 23038 1764374 ~ 1793915 (+) True AMCG00006302
AMCG00006300 mRNA downstream 63965 1805301 ~ 1806040 (+) True AMCG00006300
AMCG00006306 mRNA downstream 119643 1860979 ~ 1865306 (+) True AMCG00006306
TU135836 other upstream 308382 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 452317 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 747547 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 889597 846561 ~ 848772 (+) False AMCG00006246
TU135437 other upstream 947307 774809 ~ 791062 (+) True G108319
TU135896 other downstream 67221 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 1620018 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1761845 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1828703 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1857905 3599241 ~ 3599697 (+) False AMCG00006385

Expression Profile