RNA id: AMCG00006296


Basic Information

Item Value
RNA id AMCG00006296
length 1398
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00006296
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1743042 ~ 1752407 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttgttttgctttgcttgtctTACCCCCTTTTGTTTTGTCCCCTGTGAACCCCAATAAACCCCGGACACTACCGGAACCTGGGACTCTCTCCCTTTTTGTGTCCAGCTTTTACAGGCGTCATACATACAGTCAGTCCTACCCTTACAGGAAGATGCATACATTTTCCTTATAGGGCAGCGTGGTGGGGTGGCCAGGAATGGAGGCTCAGAGAGACCACATGTAACgcaaacaacttttatttaataaatacacaattaaatggGCACGAGGACCAACCAAAAACATatacaacacacaacaaaacagaagacacacaGGCTGGACCATGTCTTCACTGTGTTTGTTCACTTGTCCATGGGACCGGATATGACGCTCATGGGAGGTTGCGCTTGGACGCAAACGCGCACCAGTACATCGTTCACTGTGGCCGCAAATCCGCGCAGCGCGACGTCACCCTCAGCTCGCTCTTCCTACAATGGACTGTATTGCTCGTCTTTGGTGTGGACGATGGCTGAGCTTTACTGTCTTTCTGCTCTTGCCAATGAGCCTGCAGGTGTCCTCCACTCCTGTACCAGTGTCCATGACAGTGGGGGACCCTGTCACTCTGCCCTGTGAGATACCTGCTTCTACTGCTGCTGGAATTGCCGTAAACAACCTTCACATCCAATGGAAAAATTCTAGAGGATCAGTACTGGAATCTGTGTCGGGAAGACTGCACATCGGCCACGAATTTCAAGGCAGAGTTGAATTGTCTGGAAATATTAGCCAAGGAAACTTCTCCCTCACTATTAATAATACCTGGATTTCTGATGAACTCCTCTATGAGTGCTTTTATGGAGTAAACACCCCAAAAATGAAGTTTGTAACAGATGTTTTCCTCATTATCAAAGTTCGCAATGAGACCCATGGTGTGCAGTGGGGTCAGGACCTCTCTCTCGTGCTGTACACCGGAGAACCAGTGGAGGTGCTCTTTAATGGCACTGTGCTTTACTCAGGGAGCAAAGGTGCGAGTGTGGGGAAGGTCACAGCTCCAGATGAGAAAGAGCCCGGCCCCAGGGACGAGCCGAGAGTGTCAGTGCGGGGTGAGACTCTGATTGTTAGCAGAGTGACAGCAGCTGACCAGGGCCAGTACACAGTGAGGGACAACGGGACCAAACGAATCATCAGCAccatctctgtgtctgtctctgagGAAGCTGTGACTGTGCTGATCATGTGTCTGAAGGAGAAGACACTTTTAAAGAAACTGTGCTTGAGATGCTATCCTGGCTATGAGAAGACAGCAACGCATGACATGGAGGCCAACAGCCTGGACTCGGTAAAGAAACACTCCCGTTCCTGTGGACAGCAACCTGCCCCCGGCCCCCCCACACAGCCTGCCTCCAGTTCTTCTGTC

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135890 lncRNA upstream 64535 1676666 ~ 1678507 (+) False G108626
TU135905 lncRNA upstream 91583 1651055 ~ 1651459 (+) True G108632
TU135839 lncRNA upstream 188377 1352818 ~ 1554665 (+) True G108587
TU135894 lncRNA downstream 56150 1808557 ~ 1814610 (+) False G108626
TU136167 lncRNA downstream 137120 1889527 ~ 1890035 (+) True G108831
TU136168 lncRNA downstream 138629 1891036 ~ 1892425 (+) True G108832
TU136169 lncRNA downstream 140456 1892863 ~ 1893487 (+) True G108833
TU136184 lncRNA downstream 199807 1952214 ~ 1953042 (+) True G108847
AMCG00006294 mRNA upstream 1706 1738369 ~ 1741336 (+) False AMCG00006294
AMCG00006295 mRNA upstream 8731 1729809 ~ 1734311 (+) True AMCG00006295
AMCG00006293 mRNA upstream 21932 1715483 ~ 1721110 (+) True AMCG00006293
AMCG00006289 mRNA upstream 81199 1660638 ~ 1661843 (+) True AMCG00006289
AMCG00006288 mRNA upstream 95912 1638059 ~ 1647130 (+) True AMCG00006288
AMCG00006297 mRNA downstream 362 1752769 ~ 1753029 (+) True AMCG00006297
AMCG00006302 mRNA downstream 11967 1764374 ~ 1793915 (+) True AMCG00006302
AMCG00006300 mRNA downstream 52894 1805301 ~ 1806040 (+) True AMCG00006300
AMCG00006306 mRNA downstream 108572 1860979 ~ 1865306 (+) True AMCG00006306
AMCG00006301 mRNA downstream 125150 1877557 ~ 1880080 (+) True AMCG00006301
TU135921 other upstream 3775 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 313055 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 456990 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 752220 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 894270 846561 ~ 848772 (+) False AMCG00006246
TU135896 other downstream 56150 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 1608947 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1750774 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1817632 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1846834 3599241 ~ 3599697 (+) False AMCG00006385

Expression Profile