RNA id: TU136131


Basic Information

Item Value
RNA id TU136131
length 1381
RNA type TUCP
GC content 0.48
exon number 3
gene id AMCG00006298
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1722561 ~ 1724848 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTAGACTTTACTATTACTGTACACTGTGCACAGTTGTACTGCACTATAGTGTATTGTGCTATATTGTGCTGCCctatacactgtactgtactgtattgtgcttTACTGTGTACTGGGCATCTATCTCTGGGGTTTtcaacattgttattattgattgGTTGAATGATTTGTTAGTGGGATTTCCCGCAAATAACAGAGAAAATCTACAATATAAACTGTACTGCCATCCTCTCCCTCATTATCTCATTAACCAGTTAAGTTAATTGAAGGGAGATGGACAGGGTCAGTGTGCTGCAGAGGacagacactacacacacagtcagagtGAGTGAtaagagtgagagagggggagatacagacagtgtgagagagagaaaaacagaaccaCTGCAGATCGAGAGAGAAGAATAGAGGGGAGAGACtagaaataaagagagagagactattcTGGAGAGAGGTgtagactgactgactgactggacacgaCAGTACCTTAACACTGTGCTgccagagagggagaaagggagagaggacCGACAGACTAAGACGGGGAGAAGACcacaagagaagaaaaaggagaaataaaaagtgTGGATCAGCGGAAAAAgcagaaaagacagaaagaagagGAGCTAAAGGGACAGTGCATGAAAGACAAGACTAAAGATACTCAAAGagtgaaaaaagagagaaagacccCCAGTCCAATGTCTCACTTTGGGTTGTTGCTCCTCACCCTCTCTCTGCTGTACTCAGGTGggCAGTGCCTGCGGTGTTACACCTGTGTTTTCCCGGCTATCTCTCCTCTGGACTGCATCAAGTTCCCTCAGAAATGCCCCCCAGGACAGCGCTGCCTTTCCAGCAAAGCCATTGGAACCAGAGGGGATTTCCGCGTGGTCTTCTATGAGAAGAGCTGTGTGGTGGCGGAGCTGTGCGGCGCCACGGGGGAGAAGCAAGCCATGGGCCTCAACTTCACCTTCACCAACACCTGCTGCGACGAGGACCTGTGCAACGCTGCCGCCCCCCGCTGGCCGCCCCCCGCCCCCGCGCTCGGCCTGGCGCTCGCCCTGACCCTCGCTGCCCAGGGCCTGTAGAGCGGCCCGCCGGGTCACAGAGAGCGCCGGGGGGGCTGAATGCTGAGTCTTTATCCTGTgatactgtactgttactactgACTGCTATTGTAACATGACAACTATACTGTATTGTTAATATTGACCGCTATTGTAACAAGACAATCACTGTAGCCATTGACACTGTATGACATCTATATTTGATACTGTGTCTGTTTTACCCTATAGCTTTGCAGAAGTttgtaacattaaaattatagtttttttaaagataaccCTTCCTGTACTACAAAAGCTTGTCTCGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136111 lncRNA downstream 1430 1719629 ~ 1721131 (-) True G108789
TU136114 lncRNA downstream 51930 1664948 ~ 1670631 (-) True G108791
TU136113 lncRNA downstream 59528 1661753 ~ 1663033 (-) True G108790
TU136089 lncRNA downstream 162171 1504198 ~ 1560390 (-) True G108770
TU136091 lncRNA downstream 180200 1536944 ~ 1542361 (-) True G108772
TU136135 lncRNA upstream 9347 1734195 ~ 1783566 (-) True G108805
TU136170 lncRNA upstream 161117 1885965 ~ 1886276 (-) True G108834
TU136316 lncRNA upstream 328143 2052991 ~ 2057622 (-) True G108948
TU136289 lncRNA upstream 372970 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA upstream 402945 2127793 ~ 2130255 (-) False G108938
AMCG00006299 mRNA downstream 13056 1693243 ~ 1709505 (-) True AMCG00006299
AMCG00006290 mRNA downstream 39205 1678262 ~ 1683356 (-) True AMCG00006290
AMCG00006292 mRNA downstream 84830 1600137 ~ 1637731 (-) True AMCG00006292
AMCG00006291 mRNA downstream 123104 1595672 ~ 1599457 (-) True AMCG00006291
AMCG00006283 mRNA downstream 167007 1550443 ~ 1555554 (-) True AMCG00006283
AMCG00006304 mRNA upstream 83808 1808656 ~ 1818368 (-) True AMCG00006304
AMCG00006305 mRNA upstream 141711 1866559 ~ 1870731 (-) True AMCG00006305
AMCG00006307 mRNA upstream 205786 1930634 ~ 1932402 (-) True AMCG00006307
AMCG00006314 mRNA upstream 266454 1991302 ~ 1999290 (-) True AMCG00006314
AMCG00006315 mRNA upstream 286514 2011362 ~ 2016934 (-) True AMCG00006315
TU136106 other downstream 62557 1646480 ~ 1660004 (-) True G108784
TU136064 other downstream 99187 1344516 ~ 1623374 (-) False AMCG00006292
TU136071 other downstream 167897 1350485 ~ 1554664 (-) True G108755
TU136076 other downstream 212021 1368082 ~ 1510540 (-) False AMCG00006279
TU136085 other downstream 247611 1473478 ~ 1474950 (-) False AMCG00006284
TU136165 other upstream 156434 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 295153 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 372970 2097818 ~ 2130255 (-) False G108938
TU136502 other upstream 599283 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 2440086 4164934 ~ 4165600 (-) True G109633

Expression Profile