RNA id: AMCG00006299


Basic Information

Item Value
RNA id AMCG00006299
length 1846
RNA type mRNA
GC content 0.60
exon number 14
gene id AMCG00006299
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1693243 ~ 1709505 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGCTGAGGAAACTGCTCACATTGTGGTCCTGCTTGGCGCTGGTGACCACCACCCTGGGAGAGACCACCTGTAGCACTGAGAggatgggggagagagggagagggaaagggagagaaagagggggagacagaCGGTGTCTCGAGAGGAGGAGAGTGGGAGTGGAGCTGGAGGAGAGCAGTGTGGGGATCTTCAAGTCTGAGCTGCACCCATCTGTGTACAAGCTGGCGTCGGGGGAGAAGGAAGGGCTCAGTCTCTCCCCACGCAACGGAGAGGTGCTGAGCACACTGCGGGACTCCCTGAGGAACATCAAGAACATCCCGacagtgtacagtgcagtgtgtatcaGGGACACGATTGGGTTCCTGCTCTCTGTTCCTCGGCTGCCCTATATGGTTGAGAAGGAGGACTTCCAGATGGAGGGGCTGGACTTCATGTTCCTGTCGGAGGACCGGCTGCACTATCGCTCTGATCGTACCAAGGAGCTGGACGCCATGCTGGGAGACCTGCACTGTGACATCAAGGACCTGGAGACGGCGGTGATGACAGCTCTGCAGTGTAAGGTGCTGGAGAGATCGCCGTGCCTCTACCAGGCCCTGGAATACTGCGCCCAGCTGGACTGTCTGATTGCCATGGCCATGGCTGCCCGGGAGCACGGCTACTGTCGGCCCGCGCTGAGCTCTGAGCCCCGAATACGCATCAAAGAGGGCCGACACCCGCTGGTGGAGCTGTGTACGGGGGTGTTTGTGTCGAACCCCACGCTCAGCTCAGAGACGGAGGGCAAAGTGGGGCTGATTGTGTTCATGGCTCTGATTGGCTCCAGTGTCCCGGCGGCGGAGGCGGAGATCGGGTTGATCGACGGCATCTACACCCGCATGCAGAGCCGagagtctgtgtctgtgggcCTGTCCACGTTCATCATTGACCTCAACCAGGTCTGGACTGGAATGGGCTGCCTTTGTACTTCAGCACACTGTCTTTACTGTGACGCACTGTCCAGACTGCAGtgcgatCGCTGCCCCCACCTGCTCCTCTCCACCAACTTCATCAGCCTCCTGAAGCTGGGGCTGCTCCCCCCCTCGCCCCTGCTCTCCTGCCTGACTCTGGAGACAGTGGTCGATGGGGAGGAGTTGGTGTTTTTCTACCAGCTGAAGGAGGGGCGCGTGTCCGGCGGAGGGCAGCACCTCCTCGGTCATGTACCGCTGCAGATCCACCGAGGGGTCGTCCAGGTCCAGCCTGAGGAACTGCTCCACCACAGCCcgacacctgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggagctggTGGAGATAAAAGAGCTGGTGCTGGCCAAGCTCACCACCTCCAACACCACAGAGCAGCTGACAGACCAGCTCAACAGAGTCCAACACAAGCACAAGGTCACAGTGAGGGAGctgagggaggaggtgagggagctGCAGCAGGACAGGGAGGCCATGAGGAGGGAGCTGACGGCCCTGAGAGAGGAACTGCAATGCAGAGACAAGACAGTGCAGAGCCTGAGGGAGCAGCTATACAAACTCACTGCCCACAACAACCAGCCCTCAAGAAACCCAGCAGTGCACACTCCCGGACACCGCAGACCCCAGCCTGGATACGCCCGACCACAGGACAGCAGACCCAGAGTGGAGCCCATCCAGAACATGCACAAAGCAGTGCAGCAGCACAGCCAGCGCAACTACGCAGCAGTAATCAGCAGAGTGGCCGACACCGACACCGGGGAGCTACAGGAGATCCGACACCTCCTCAACCTCATCCGGACCCGACTGATGAGA

Function

GO: NA

KEGG:

id description
K08741 MSH5; DNA mismatch repair protein MSH5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136114 lncRNA downstream 22612 1664948 ~ 1670631 (-) True G108791
TU136113 lncRNA downstream 30210 1661753 ~ 1663033 (-) True G108790
TU136089 lncRNA downstream 132853 1504198 ~ 1560390 (-) True G108770
TU136091 lncRNA downstream 150882 1536944 ~ 1542361 (-) True G108772
TU136077 lncRNA downstream 283496 1405393 ~ 1409747 (-) True G108760
TU136111 lncRNA upstream 10124 1719629 ~ 1721131 (-) True G108789
TU136135 lncRNA upstream 24690 1734195 ~ 1783566 (-) True G108805
TU136170 lncRNA upstream 176460 1885965 ~ 1886276 (-) True G108834
TU136316 lncRNA upstream 343486 2052991 ~ 2057622 (-) True G108948
TU136289 lncRNA upstream 388313 2097818 ~ 2130255 (-) False G108938
AMCG00006290 mRNA downstream 9887 1678262 ~ 1683356 (-) True AMCG00006290
AMCG00006292 mRNA downstream 55512 1600137 ~ 1637731 (-) True AMCG00006292
AMCG00006291 mRNA downstream 93786 1595672 ~ 1599457 (-) True AMCG00006291
AMCG00006283 mRNA downstream 137689 1550443 ~ 1555554 (-) True AMCG00006283
AMCG00006285 mRNA downstream 195189 1494360 ~ 1498054 (-) True AMCG00006285
AMCG00006298 mRNA upstream 13342 1722847 ~ 1723402 (-) False AMCG00006298
AMCG00006304 mRNA upstream 99151 1808656 ~ 1818368 (-) True AMCG00006304
AMCG00006305 mRNA upstream 157054 1866559 ~ 1870731 (-) True AMCG00006305
AMCG00006307 mRNA upstream 221129 1930634 ~ 1932402 (-) True AMCG00006307
AMCG00006314 mRNA upstream 281797 1991302 ~ 1999290 (-) True AMCG00006314
TU136106 other downstream 33239 1646480 ~ 1660004 (-) True G108784
TU136071 other downstream 138579 1350485 ~ 1554664 (-) True G108755
TU136076 other downstream 182703 1368082 ~ 1510540 (-) False AMCG00006279
TU136085 other downstream 218293 1473478 ~ 1474950 (-) False AMCG00006284
TU136068 other downstream 340302 1350485 ~ 1352941 (-) False G108755
TU136131 other upstream 13056 1722561 ~ 1724848 (-) True AMCG00006298
TU136165 other upstream 171777 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 310496 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 388313 2097818 ~ 2130255 (-) False G108938
TU136502 other upstream 614626 2324131 ~ 2329991 (-) True AMCG00006328

Expression Profile