RNA id: AMCG00006300



Basic Information


Item Value
RNA id AMCG00006300
length 639
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00006300
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1805301 ~ 1806040 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tcagtgtcagtgttggTGGGGGACTTTATCTCTCTGCCCTGTgatggagctgctgctgctgggatcCCCGAGGACAGACTGCACATCCAGTGGAAAACTCCAGACAAATCAGTGATGGATTCACTGCATCGGCGAGACTACCCCGGCCCAGGCTTTGAGGGCAGAGCCAAGGTCTCCAGAGAGAAGATCTCACAGGGGGACTTCACTCTGACCATTCACAACGTCACCATCTCTGATGAAGACATCTACGAGTGCTTTTATGAGAATGGAGGAGGTCGGATGAAGTTTGTTGGAGATGTTCGTCTCACCGTCACAGGCCGCAGTGAGAACATCAGTGTGTTGTCTGGCAAGGACCTCTCTCTGCACCTCTACactcgggagccagtggagctGCTGTTCCAGGGCACCGTGCTGTTCCCACAGAGGCGAGTGCGTAGGGTGGTAAGGCAAGTCGCAGGACCAGCCAAGAGCCAGACCAAGCCCGGCCAAGAGGACAGGAGAGTGTCGGTGCAGGATGACACTCTGATTCTGCACAGTGTGACCCATGCTGACCAGGGCCAGTACACAGTGAGGGACGCCAGGACCAAACGGGCCATCagcactgtctctgtgtctgtggagGGTGAGGAAAGATATTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU135890 lncRNA upstream 126794 1676666 ~ 1678507 (+) False G108626
TU135905 lncRNA upstream 153842 1651055 ~ 1651459 (+) True G108632
TU135839 lncRNA upstream 250636 1352818 ~ 1554665 (+) True G108587
TU135894 lncRNA downstream 2517 1808557 ~ 1814610 (+) False G108626
TU136167 lncRNA downstream 83487 1889527 ~ 1890035 (+) True G108831
TU136168 lncRNA downstream 84996 1891036 ~ 1892425 (+) True G108832
TU136169 lncRNA downstream 86823 1892863 ~ 1893487 (+) True G108833
TU136184 lncRNA downstream 146174 1952214 ~ 1953042 (+) True G108847
AMCG00006302 mRNA upstream 11386 1764374 ~ 1793915 (+) True AMCG00006302
AMCG00006297 mRNA upstream 52272 1752769 ~ 1753029 (+) True AMCG00006297
AMCG00006296 mRNA upstream 52894 1743042 ~ 1752407 (+) True AMCG00006296
AMCG00006294 mRNA upstream 63965 1738369 ~ 1741336 (+) False AMCG00006294
AMCG00006295 mRNA upstream 70990 1729809 ~ 1734311 (+) True AMCG00006295
AMCG00006306 mRNA downstream 54939 1860979 ~ 1865306 (+) True AMCG00006306
AMCG00006301 mRNA downstream 71517 1877557 ~ 1880080 (+) True AMCG00006301
AMCG00006303 mRNA downstream 77714 1883754 ~ 1887570 (+) True AMCG00006303
AMCG00006308 mRNA downstream 90465 1896505 ~ 1908086 (+) True AMCG00006308
AMCG00006309 mRNA downstream 235976 2042016 ~ 2045884 (+) True AMCG00006309
TU135921 other upstream 66034 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 375314 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 519249 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 814479 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 956529 846561 ~ 848772 (+) False AMCG00006246
TU135896 other downstream 2517 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 1555314 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1697141 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1763999 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1793201 3599241 ~ 3599697 (+) False AMCG00006385

Expression Profile