RNA id: AMCG00006302


Basic Information

Item Value
RNA id AMCG00006302
length 2142
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00006302
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1764374 ~ 1793915 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCACAACTGGGGAAGACAGCTCAGCTCTCTATCCAGTCATGGGCTCATTTTACTTACTACCTACCTCTTCCAGTGCTATTCCAGTCTGTTCACAGACATCCTGAATCTGGTGCAGGGCGCCTCTACGCTGTCTCCTGCTGATGGCAGCTGCCGGCAGAGCCTCCCTACAGACACCGCGCTGACAGCTGCGGGTCCGAGCCGCGATTTCAAAATCTATGAAGAAACGATGTGGTTTGTACAGCGAGAACAGACACTGACTCTGGCGGTTTTAGCCACTAGAAACCCTGCAGAGCTGAATATGGGTCCATTTGAGCTGCTTGTTCTGTCTGACCGTCGCCTCAGTCTGGCGCTCAACTCCTCCAGTGACACCAGCAGTCTGAGTATCACCAGTGTGACCGAGGTGGACCTGGCGCTGTACTACTGTGctgtgagagacagagggaggatAGAGATAGGAGCTGGGATCAGGCTGGTCTATGAAGAAGCTTTTTATGTGGGATATTTCATAGCCACAGTGGTGGCCATCAGCTTGGGGATCCTGTTGGGGATCCCGTTGATCGCAGCGATTGTGTACGGAGTGTGGAAGCTGATTCATACTTGTCAGACCCGAGGCACGGAGAGGAGGGTTATTGCAAATGGGGAGAGGGCAGTGAAGAACGCCTCCCTTCAGCTGGACCGAGACCTGGACTCCTCACTGCGCGTAAGTGTAGCTGCACtgtcctcctctcctgtccaaCTGTCTGTATCAGTGGGAGACTCTGTGTCTCTGCCCTGTGATGGAGCTGCAGCTGCTGGGATCCCTGAGGAGAAAATGCACATCAAGTGGAAAACCTCCAGACCGGTCCTGGATTCAATCTATGGTAGAGCCTATCCTGGCCAAGGCTTCGAGGACAGAGCTGAGGTCTCCAgagagaagatcagacaggggGACTTCTCTCTGACCATTAAAAGCACCCTGCTCTCTGACGAAGGCCTGTACGACTGCTATTACAGAGGCAGAGACATCATGGATGTGCCGGCTGGCGGGgacctctctctgcccctctacACCCGGGAGCCAGTGGAGCTGCTGTTTGGAGGCACTGTGCTGTTCccacagagcccagagcccaggATGGCAAAGCTAGTGGCAGGTCCAGATGAGCCCGGTCCTGGGGATGAGCTGAGAGTTTCAGTGTGGGGTGAGAGTCTCATAGTGCGCAGCCTGACAGCAGCTGACCAGGGCCAGTACACAGTGAGGGACAACAGGACCAAACGGGCCATCAGCaccgtctctgtgtctgtgtctgaggAAGGCTGTAGCATCGACACCGGGGCTCTGCGACCACTGATCTCCCTGAGCGCCTCCTTCCCGTCCCGGCGGAGACTGCAGGTGAACATCAAGGCGTCACTAATCAACACAACCAAAGCAACTCACCGCCGACATGATGCCCACtACGCTGCTGCGGGTTGGGGGAGCCTCCCTACAGACACCGCGCTGACACACCTGCTGGTCCGAACCGGTGCCACCGCCACCCTGCCCTGCGATTTCAAAATCTATGAAGAAACGATGTGGTTTGTACAGCGCGAACAGACACTGACTCTGGCGGTTTTAGCCACTAGAAACCCTGCAGAGCTGAATATGGGTCCATTTGAGCTGCTTGTTCTGTCTGACCGTCGCCTCAGTCTGGCGCTCAACTCCTCCAGTGACACCAGCAGTCTGAGTATCACCAATGTGACCGAGGTGGACCTGGCGCTGTACTACTGTGctgtgagagacagagggaggatAGAGATAGGAGCTGGGATCAGGCTGGTCTATGAAGggAGTGACGGTCCCACGGTCAGCTGTCCTGAAGCCGGCGAGGGAGGCTGGCTGTCTCGGTCGTGGCTCCCTGCCACCTGCGCCCTGATCTCTGCGCTGCTGTCCTCGGCCTGCGTCTACGGCCTCTGTCACAGGATAGGTGTTACAACAGAGCCCCAATCCCCCCAACACAGCGTGGAGCAGAGCAGACATGGAGACCCTGCGCAGGAGGAAAACGGAGGGGTGAACTATGCCAGGGTGGGGATCCTTACAGTCCAGCCCCTCGGCCGGGAGAGAGAGGCGGCGGGTGCCACCTGCATGTACTCCGAAGTCAACAAGCGAAGCAGCACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135890 lncRNA upstream 85867 1676666 ~ 1678507 (+) False G108626
TU135905 lncRNA upstream 112915 1651055 ~ 1651459 (+) True G108632
TU135839 lncRNA upstream 209709 1352818 ~ 1554665 (+) True G108587
TU135894 lncRNA downstream 14642 1808557 ~ 1814610 (+) False G108626
TU136167 lncRNA downstream 95612 1889527 ~ 1890035 (+) True G108831
TU136168 lncRNA downstream 97121 1891036 ~ 1892425 (+) True G108832
TU136169 lncRNA downstream 98948 1892863 ~ 1893487 (+) True G108833
TU136184 lncRNA downstream 158299 1952214 ~ 1953042 (+) True G108847
AMCG00006297 mRNA upstream 11345 1752769 ~ 1753029 (+) True AMCG00006297
AMCG00006296 mRNA upstream 11967 1743042 ~ 1752407 (+) True AMCG00006296
AMCG00006294 mRNA upstream 23038 1738369 ~ 1741336 (+) False AMCG00006294
AMCG00006295 mRNA upstream 30063 1729809 ~ 1734311 (+) True AMCG00006295
AMCG00006293 mRNA upstream 43264 1715483 ~ 1721110 (+) True AMCG00006293
AMCG00006300 mRNA downstream 11386 1805301 ~ 1806040 (+) True AMCG00006300
AMCG00006306 mRNA downstream 67064 1860979 ~ 1865306 (+) True AMCG00006306
AMCG00006301 mRNA downstream 83642 1877557 ~ 1880080 (+) True AMCG00006301
AMCG00006303 mRNA downstream 89839 1883754 ~ 1887570 (+) True AMCG00006303
AMCG00006308 mRNA downstream 102590 1896505 ~ 1908086 (+) True AMCG00006308
TU135921 other upstream 25107 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 334387 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 478322 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 773552 985873 ~ 990822 (+) False AMCG00006256
TU135656 other upstream 915602 846561 ~ 848772 (+) False AMCG00006246
TU135896 other downstream 14642 1808557 ~ 1812675 (+) False G108626
TU136837 other downstream 1567439 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1709266 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1776124 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1805326 3599241 ~ 3599697 (+) False AMCG00006385

Expression Profile