RNA id: AMCG00006303


Basic Information

Item Value
RNA id AMCG00006303
length 2012
RNA type mRNA
GC content 0.65
exon number 6
gene id AMCG00006303
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1883754 ~ 1887570 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGCCGCGCCGGAGCGTCATCGATTATTTCATTACAGCCATTACTATCGGAACAGcgctatatttatatttattgggTTGTATTGCTATCTTTGTATCTACGCGTTGcctattttgttttggaaataaacTCAAATTTGACAGCCGACGCCGGAGCGATTCTAATCCGATTCAGTCGACACTTGAACCGCCGGTAAAGACCATCTCTGCGCGGACACACGGACCCCAGCGGAGCGGCGCAGGGATACGAGCGGCACACGGACGACAGAGCAGCACAGCTGTGTGTTGTTCCCGAGATGGTGGCACTCATGTCCGGCTTGACCCCTCTGGACGGCGCGGCGGACACCGGGCTGCTGTGCTCGTCCTGCGGCTTCCTGCTGGTGCGGCCCCGCCAGACCGCCTGCGGCCACCGCTACTGCGAGGCGTGCCTGGGGAGGATGCTGGGGAAGTCTGAGAGTGGAGTGTGCTGCGTGTGCCAGGACCCTATACTGTCCACTCAgGTGTTTGTGGACCGGGCGGCAGAAAGCGACGCAGGCAGTGTGAAGATCAGCTGTCCATTCTCACACTATGGCTGCGCCTGGACTGGAGCACTGAGCGAGTACCTGtcCAGTCACCAGGGTCAGTGTGACTGCACAGATGAGCCCTGTGCCAACGCCAACCTGGGCTGCCGCTTTGTTGGCGATCGGTTGGCACTGTGTCAGCACGAGAGCGAGGCGTGTGAGTGGAGGATGGTGTCCTGCCCACACTGCCAGCAGGAACTGGCCTGGGCTCTGATACAGGATCACCAGTCCAGCTGTCCTCAGCTCCTCAATCACAATCATACCAGCCCTGCGGTCATCCAGCCCCGGGGGACGGGCCAGGGACAGACTCGGCAGCACCGCAGCCAGGAGGTCAACTCCGCCTTCAAGCAGCTGGCCATGGACCGCCTGCTGTCCCTGGCCTCCAAAGTGCTGCCCCAGCTCCCCCAGAAAGCCCCGCCCAGCCCTGCCCCTGCCCAACCCCAGTGCCAGTCGGGCACCTGCGAGGATGCCTCCAATGTGCGCCAGCTCCTCGGGGTCCTGAGCCAGGACCTGGAGGCGTGCCACCGGGCCATCGAGGGGCTGCAGTCCCGCTGTGAGCGCTACGAGCGCGTCCTGTCCCAGCTGAGCCCCCCACCGGCCCCTGCAGGGACAGGCGCCCCCTGCTCGccccgctcctcctcctctgtgaatCTCTCTCAGGACAAACCCCCCCAGCCCCTGATGTCCCCCCAGATTGCGGCCCGTAGCGGAATGGGAGCCCCCCCTGGCTGTCCCCCTGCCCACCTGAACCTCTCCCCGCCTCCTCCCCGGGCTGCCCCTCAGCTCTCCACCCACAACTGCCTCCCCCAGCCCCTGGTTTGCCCCCGAGCCATGTCTCCCCCTCTGTCCCCGTCCTCCCAGTCTGCCGCCTCTACGCCACCTGCGCTGCCACTGGCCTCCCAGAACGGAGTGCTGCTCTGGAAGGTTGAGAACTTTTCCGCCCATTTCAAAGCTGCAGCTCCTGTCTCCTCTccctactcctcctcctcttcctcctcctcctcctcctcctccagaccCAAGCCCTACGCCCTCACCTCACCCCCCTTCCAGACCAGTCCGCTGGGGTACCGCCTGTGCTGCCGGCTGTACCCCCAGGGTGACGGGGCGGGCCGCGGCACCCACCTGTCCCTCTTCCTGTGCCTGCTAAAGGGCGAGTGTGACCAGCTGCTGCCCTGGCCCTTCGCCCACAAGGTCAGCTTCACGCTGCTAGACTGCACTGCTGCCCGCCGTCACCGGGGGGAGACGTTCCTGCCCGACCCGCTCTCTGCCTCCTTCCACCAGCCCAGGGGCGCCATGAACCTGGCCAGTGGCTGCCCGCGCTTCGCCAGCCTGTCCCTGCTGGGGCTGGGGAgcggggctggggctggggggcAGGGCAGGTCTGCCTACCTGCACAACGACACCCTGTACATCAGAGTGCAGGTGGAGCCGGCTGGGGCTGgcctgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135895 lncRNA upstream 69144 1637397 ~ 1814610 (+) True G108626
TU135894 lncRNA upstream 69144 1808557 ~ 1814610 (+) False G108626
TU135890 lncRNA upstream 205247 1676666 ~ 1678507 (+) False G108626
TU135905 lncRNA upstream 232295 1651055 ~ 1651459 (+) True G108632
TU135860 lncRNA upstream 388046 1494364 ~ 1495708 (+) True G108605
TU136167 lncRNA downstream 1957 1889527 ~ 1890035 (+) True G108831
TU136168 lncRNA downstream 3466 1891036 ~ 1892425 (+) True G108832
TU136169 lncRNA downstream 5293 1892863 ~ 1893487 (+) True G108833
TU136184 lncRNA downstream 64644 1952214 ~ 1953042 (+) True G108847
TU136191 lncRNA downstream 104045 1991615 ~ 2011808 (+) True G108854
AMCG00006301 mRNA upstream 3674 1877557 ~ 1880080 (+) True AMCG00006301
AMCG00006306 mRNA upstream 18448 1860979 ~ 1865306 (+) True AMCG00006306
AMCG00006300 mRNA upstream 77714 1805301 ~ 1806040 (+) True AMCG00006300
AMCG00006302 mRNA upstream 89839 1764374 ~ 1793915 (+) True AMCG00006302
AMCG00006297 mRNA upstream 130725 1752769 ~ 1753029 (+) True AMCG00006297
AMCG00006308 mRNA downstream 8935 1896505 ~ 1908086 (+) True AMCG00006308
AMCG00006309 mRNA downstream 154446 2042016 ~ 2045884 (+) True AMCG00006309
AMCG00006311 mRNA downstream 172629 2060199 ~ 2068535 (+) True AMCG00006311
AMCG00006312 mRNA downstream 181180 2068750 ~ 2073323 (+) True AMCG00006312
AMCG00006310 mRNA downstream 192962 2080532 ~ 2089002 (+) True AMCG00006310
TU135896 other upstream 71079 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 144487 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 453767 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 597702 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 892932 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 1473784 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1615611 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1682469 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1711671 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1750173 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile