RNA id: AMCG00006305


Basic Information

Item Value
RNA id AMCG00006305
length 1905
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00006305
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1866559 ~ 1870731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGTGCAGTCTATCCCGCTGGCCACGGTGACCATCGGGCCGCAGTCATGGCAGGAGGACACGCTGCGCTCCATCCGCCTGGCCGGGCACCTGGTGCGCCGCGCCGCGGGCAGGGGGCCCCTGTCGGCCGGGGCCAGCGGACCGCGCTGCGCCTCTTCTCCTCTCCGGACCGGCAGGTCTGGAAACACTGAGGCCGACAGGCAGGTGTGGGAAGATAGTGATGGGATTGTACGTGAGCAGGAGGGGAATCCAGTGTCCACAGTGGACATGTGCTCCCCGCTGCCCCGCTCTGCCCTGCCGCCTCCCTACCTGCGGGAGCTGTGTGCGGGTCGGAGTGAGGCGGTGGTCCGGGGGTACCTGCGGGGGGTGCGGGGGGTGCGAGCGGCGCTGCAGCAGCTGGGGGCCAGGGTGGCCCGGGAGGTGAGCAGTCTGGGTCGCCGCCGGGGGGCTCTGGACGCGGCGCTGGCCTCGCTGCGGGGGGACCTGCTGCTCAACCACAGCTGTGTCGAGAGACGCAGCCTGAGGCCCCCCACCGCCGAGACTTGTAAAGAGGTCATGGAGATCTCCCAGGCAGCCCTCAGCCAGTCACAGCAGCTGAGGAAGAGGATCACAGAGCTGATTGGCCAGGCCGTCTCCCGGCAACAGGCTGCCCACCAATCAGTGAACAACGGCCTGGGCCCATTGTCCAGAGCTGACCTTCTGACCCGGGAGCGGCTGGACAGGCCGATGGTGCAGCTCTACCACAGACACCCCGGCACACAGCTGCCCGAGGCCACACAACTCATACAGGGAGGCGCTGTGCTCCGgagctctctcctctcctccggTCGTGACCTGGCGCTGCTGCGTCTGGCCCGCCTGCGACTGGACGACGACCTGCGCGGGAAGAGAGCGGCGGCCAGCGTGGACTCCTCCGTCGCCAGGCTGCGCCGGAGCCACGAAGACTGCCGCCGGGGAACCCCTCTGCTGCTGCAGCAGGGTGCCTGCTAgctgggacagacagacagacagatcttCTTCTTTTTAGTTCATTCTAActttcttgtttgctttgtgtgtgtgtgtgggggggggtgcaaaCTTTGGACTGCAACTCTACAAAAATCGGTGCTCGATCAGCTGTAATCCTCAGATTTCTCTCCAGGGCTGAATCAGCAGACTCTGGGAAGACATGGATGAGTTCCTGTGTTGATCAGCTGTTATTAAAGACAATGAATCGCCCTCTGACACTGTTTCTAATCTAGTGTGACGATGCTCTCGACTCCTCCTGTACTAACTCACAGTTCTGGACCGATTACAATGGAGTTCTCCAGTTTGAGCAATGACAGCGCCTGGCTTTTACAGATTTTAAGAGTGCGGTTCGACTACCGATCTGCTCCTTTATACTGCGTTTACACTGCAGGCTCAAGCCTAAGCAGCTTTGGTCCGACTGCCAGCAAGATTCGTTTCACATGTAATAGATTTGACGTTCTGCTTGTTGGAGTTACTGAAAATGACGCTCAAGTGAAAGGGGCGTCGCTTGGAGACGCTCAATTTGTGCGTAAGGCCGATTGTGTTTACGCTGCAGTTGGGACAGACCTGAGCCGTCTCGGGGCCACCTCTTAAGCAGGCCGCTTTTAGGTCGGCTTTGGTCCGCCTGTAGTGTTTACACTGCCCTATCAGAACAGAGCCCTCATAGAAGGGGCCCGTGTGAACGCAGTATTCGAGTAGAACGCAGTagatacagtgtgtgtgtgttactgtgtgtgaaGAGTGTCTAATGGCGACAGTAACCAGTATCTGATCCAATAAACTGTATTGATGTGATGGTGTGGTTGTGCTGTCTGTGTAGACCAGAGGTGTCAAGGCAGGAGATTCAATCCAGAGGTTTAATTCATAAACAAGGAACACAGAGACATCTAC

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko03030 DNA replication
ko03430 Mismatch repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136135 lncRNA downstream 82993 1734195 ~ 1783566 (-) True G108805
TU136111 lncRNA downstream 145428 1719629 ~ 1721131 (-) True G108789
TU136114 lncRNA downstream 195928 1664948 ~ 1670631 (-) True G108791
TU136113 lncRNA downstream 203526 1661753 ~ 1663033 (-) True G108790
TU136091 lncRNA downstream 324198 1536944 ~ 1542361 (-) True G108772
TU136170 lncRNA upstream 15234 1885965 ~ 1886276 (-) True G108834
TU136316 lncRNA upstream 182260 2052991 ~ 2057622 (-) True G108948
TU136289 lncRNA upstream 227087 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA upstream 257062 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA upstream 257062 2127793 ~ 2130255 (-) True G108938
AMCG00006304 mRNA downstream 48191 1808656 ~ 1818368 (-) True AMCG00006304
AMCG00006298 mRNA downstream 143157 1722847 ~ 1723402 (-) False AMCG00006298
AMCG00006299 mRNA downstream 157054 1693243 ~ 1709505 (-) True AMCG00006299
AMCG00006290 mRNA downstream 183203 1678262 ~ 1683356 (-) True AMCG00006290
AMCG00006292 mRNA downstream 228828 1600137 ~ 1637731 (-) True AMCG00006292
AMCG00006307 mRNA upstream 59903 1930634 ~ 1932402 (-) True AMCG00006307
AMCG00006314 mRNA upstream 120571 1991302 ~ 1999290 (-) True AMCG00006314
AMCG00006315 mRNA upstream 140631 2011362 ~ 2016934 (-) True AMCG00006315
AMCG00006313 mRNA upstream 150163 2020894 ~ 2021865 (-) False AMCG00006313
AMCG00006316 mRNA upstream 156405 2027136 ~ 2034235 (-) True AMCG00006316
TU136131 other downstream 141711 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 206555 1646480 ~ 1660004 (-) True G108784
TU136071 other downstream 311895 1350485 ~ 1554664 (-) True G108755
TU136165 other upstream 10551 1881282 ~ 1881837 (-) True G108829
TU136306 other upstream 149270 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 227087 2097818 ~ 2130255 (-) False G108938
TU136502 other upstream 453400 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 2294203 4164934 ~ 4165600 (-) True G109633

Expression Profile