RNA id: AMCG00006306



Basic Information


Item Value
RNA id AMCG00006306
length 1044
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00006306
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1860979 ~ 1865306 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACAGGAGGCCTCAGACCCAGAGACCCGGACTCTCCACAGCAGTGATGCAGTCTCTGTACAGCGGGGTTGCGCTTCTGCTGCTCACCTCACCGGTGGACTGCTGTGGCCGCTGTGAGGTGTACAGCCACAACTGGGCAGGATGGCCCAACAACCAGCCAGAACAAGAAGGGGGGAGGTGGGACGCCTGGGAACTACAACACCACCCGGGGTCCATCGAAGAGACTGCCCTCATGGTGCTGCAGTACCTGGCAGAGGATATTCTAGTGGTGCCATCCCCAGAGCCAGAGTGGGAAGCGCTGGAGTTGCCGTTGCCCCGGCTGGAGCTGTCAGAGTCCCCAGCAACCAAGGAGGACGTCCTGCCGTTCCCGCCTCTGCCTTCTGAGGCGGAACTCCTGCTGCTCCTGCCACCTGAGGGAGGTGGCCTTCCTGAGCCCAAGAGGTCGCCCGGGGACGACACACATTGGTTGTCGTTGTCAATGCCAGAGTCCAGCCTGGCCCAGGTGTGCGGCACAGCGCCGGTGGAGAGGGAGGTCCGGCCCGGGGAGAGCGTCACCCTGCCCTGCGACATCACACACCATCACGAAACCCTGTGGTTCGGACAGCGGCGCGAAGAAACACCGTTTCTGGTCATTTCGAGTCAGATTAAACATCTGAACATGACTGTAACTTACGGCGAGTCTAATGTGACCACGGAGCTGAACTCGTCCTCTCACTCGTTCAGTCTGCGGATCGGGAGCGTCACGGAGGCGGACCTGGCGCTGTACTACTGCGCGGAGAGGCAGCGCGGAGTCCTCAGATTCAGCACAGGAGTCCGGCTCGTCTATCCGCACAGCCGGGAGGACCATTGCAGCTGTGAAGGTGGGAAAGAGTCTGATGGTGcccagaagagagagaagaggaggcaTGACAGTGAGCAGGACATGGATGGAGCTGTGAGCTATGCTATGTTGGAGATCCACCCCGCACTCCCCAGGCACCCCAAGAAGGGGAGCACACCTGATCAGGACTCCAGTATTTACGCCAAGGTCAGGCGTCCGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU135895 lncRNA upstream 46369 1637397 ~ 1814610 (+) True G108626
TU135894 lncRNA upstream 46369 1808557 ~ 1814610 (+) False G108626
TU135890 lncRNA upstream 182472 1676666 ~ 1678507 (+) False G108626
TU135905 lncRNA upstream 209520 1651055 ~ 1651459 (+) True G108632
TU135839 lncRNA upstream 306314 1352818 ~ 1554665 (+) True G108587
TU136167 lncRNA downstream 24221 1889527 ~ 1890035 (+) True G108831
TU136168 lncRNA downstream 25730 1891036 ~ 1892425 (+) True G108832
TU136169 lncRNA downstream 27557 1892863 ~ 1893487 (+) True G108833
TU136184 lncRNA downstream 86908 1952214 ~ 1953042 (+) True G108847
TU136191 lncRNA downstream 126309 1991615 ~ 2011808 (+) True G108854
AMCG00006300 mRNA upstream 54939 1805301 ~ 1806040 (+) True AMCG00006300
AMCG00006302 mRNA upstream 67064 1764374 ~ 1793915 (+) True AMCG00006302
AMCG00006297 mRNA upstream 107950 1752769 ~ 1753029 (+) True AMCG00006297
AMCG00006296 mRNA upstream 108572 1743042 ~ 1752407 (+) True AMCG00006296
AMCG00006294 mRNA upstream 119643 1738369 ~ 1741336 (+) False AMCG00006294
AMCG00006301 mRNA downstream 12251 1877557 ~ 1880080 (+) True AMCG00006301
AMCG00006303 mRNA downstream 18448 1883754 ~ 1887570 (+) True AMCG00006303
AMCG00006308 mRNA downstream 31199 1896505 ~ 1908086 (+) True AMCG00006308
AMCG00006309 mRNA downstream 176710 2042016 ~ 2045884 (+) True AMCG00006309
AMCG00006311 mRNA downstream 194893 2060199 ~ 2068535 (+) True AMCG00006311
TU135896 other upstream 48304 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 121712 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 430992 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 574927 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 870157 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 1496048 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1637875 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1704733 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1733935 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1772437 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile