RNA id: AMCG00006307


Basic Information

Item Value
RNA id AMCG00006307
length 954
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00006307
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1930634 ~ 1932402 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGAGTGATTGCTCTGCACCGCCCATCatctctgtgcatctctgtgctCCTGGGTGTCTTGGGCTTCAAAGTTGTCTCCTCCACTACTGTGTCCGTGTCAGTGGGGGACTCTGTCACTCTGCCCTGTGATGGAGCTGCAGCTGCTGGGATATCTGAGGAGAAACTCTACATCCAGTGGAAAAGTACAGAAAGAGATGTGTGGCAGTCAATCTACGGATCTATCTCCCTCGGCCGACACTTCGAGGGCAGAGCTGAGGTCCCCAGAGAGAGGATCAGACAGAGGGACTTCTCTCTGACCATTAACAGCACCCTGCTCTCTGACGAAGGCCTGTACGAGTGCTATTACAAGAATGGAGGAATATATATGAAGTTTCTTGGAAGTGTTCAACTCACTGTGACAAGTGTTAGCAAAGCCCTCTCTCTGCAGTCTGGAGccgccctctccctccccctgttCACTGCAGAGCCAGTGGaggtgctgtttgctgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGCGAGCTGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGACCCTGCGCTCACTCACAGCAGCTGACCAGGGAAACTACACAGTGAGGGACTCCAGGACCAACCGCACCATCAGCagcgtctctgtgtctgtgtctgaggAAGACCCCAGTCCCTCTGCATCGTCTCCTCCAGCTTCAGCTGTGACTGTGACCGCGACTGTGGCTGCTGTCTGCGTCTCTCTGGCAGCTGTGACTGCACTGATCATGTGGCTGAAGAGGAAGACTCTTTTGCAGACACTGTGCTTAAAACACTATCCTGGTTATGAGAAGACTGCAGCGCAAATTATTGAGGCAAACTGCTTGGAATTGGGAAAGAAAAGCTCCCATTCCTGGAAGCAACCGCTAGAGCAGTAG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136170 lncRNA downstream 44358 1885965 ~ 1886276 (-) True G108834
TU136135 lncRNA downstream 147068 1734195 ~ 1783566 (-) True G108805
TU136111 lncRNA downstream 209503 1719629 ~ 1721131 (-) True G108789
TU136114 lncRNA downstream 260003 1664948 ~ 1670631 (-) True G108791
TU136113 lncRNA downstream 267601 1661753 ~ 1663033 (-) True G108790
TU136316 lncRNA upstream 120589 2052991 ~ 2057622 (-) True G108948
TU136289 lncRNA upstream 165416 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA upstream 195391 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA upstream 195391 2127793 ~ 2130255 (-) True G108938
TU136514 lncRNA upstream 414120 2346522 ~ 2390552 (-) True G109090
AMCG00006305 mRNA downstream 59903 1866559 ~ 1870731 (-) True AMCG00006305
AMCG00006304 mRNA downstream 112266 1808656 ~ 1818368 (-) True AMCG00006304
AMCG00006298 mRNA downstream 207232 1722847 ~ 1723402 (-) False AMCG00006298
AMCG00006299 mRNA downstream 221129 1693243 ~ 1709505 (-) True AMCG00006299
AMCG00006290 mRNA downstream 247278 1678262 ~ 1683356 (-) True AMCG00006290
AMCG00006314 mRNA upstream 58900 1991302 ~ 1999290 (-) True AMCG00006314
AMCG00006315 mRNA upstream 78960 2011362 ~ 2016934 (-) True AMCG00006315
AMCG00006313 mRNA upstream 88492 2020894 ~ 2021865 (-) False AMCG00006313
AMCG00006316 mRNA upstream 94734 2027136 ~ 2034235 (-) True AMCG00006316
AMCG00006320 mRNA upstream 165171 2097573 ~ 2099149 (-) True AMCG00006320
TU136165 other downstream 48797 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 205786 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 270630 1646480 ~ 1660004 (-) True G108784
TU136071 other downstream 375970 1350485 ~ 1554664 (-) True G108755
TU136306 other upstream 87599 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 165416 2097818 ~ 2130255 (-) False G108938
TU136502 other upstream 391729 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 2232532 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 4081702 6014104 ~ 6016943 (-) False AMCG00006491

Expression Profile