RNA id: AMCG00006309


Basic Information

Item Value
RNA id AMCG00006309
length 2119
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00006309
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2042016 ~ 2045884 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAACCGACAAGCGCGACGTCACTGCAGCGGCCCCGCCCACCCGGAAGAGCCGgccggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacaatagAGCCTACAGTCCCCGCAATGGCCGCTGTCACGCCGCGCAGCCTGGGCCTCGGCGCCCTCACGCTGCTCAACTTCGTGTTCGTGTTCGGCACCGGCGTGGAGTTCGTCCGCTTCGTGTCCTTCCGGGCGATATATCACAACCTGAGTGGACCGGGCGGGGCCCCGCAGTGTCGAGacTCAGTGGGCTGGGCGGAGGCCCTGCGGCGGCGCTCGGTGCTGAGCAGTATGTGTGTGGACGGGGGTCTGATCCTGCTGTTTGCCCTGCAGCACAGCGCCCTCGCCTGGCCGCCCCTCAAACGCCTCTGCCAGGCCGGGCTGGGCGTACTGCACCGGGGCTTCTACACTTTCACCACCGCGCTCACCCTGCAggtcCTGATGCGGTGCTGGCAGCCAGTGAGCGGCGCCCCCTGCCTGTGGTCGGTGAGCGGTGCACCATGGGACACCTGGCTGCCGCTGCTGTGCTTCATTCTGCACTTCCTGTGCTGGATGGTCATCTGCAGCATCCTGCTCATCTTTGACTACGCTGAGCTGCTGGGCATCAAGCAGgtttaCTACCACTGCCTGGGCCTGGGCGACCCCCTGTCCATGAAGTCGCCCCGGGCGCAGCGCCTGTTCTCGCACCTGCGCCACCCCGTGTTCGTGGAGCTGTGCGTGGTGCTGTGGGCACTGCCCTGCCTGCCACTGGACCGGCTGCTGCTGGCCGTGGGGCTGACCACCTACCTGGCGCTGGGCCACTCCCTGGACACGCAGGACTGCGCATACCTGCACGCCCAGCTGCGCAGCAAACTGCAGCTGTTCAGCCAGCCAGTCATGGGGGAGGGTGGGGCCAGCAGCACCAATCACAAGACAGACTGAGGCTCAGGctgagaggggtggggggaggtgtgtgtgtgtctttctttctatgattctgtgtgtgtccctctctttctttctgtgtgtctttgtgtctgagtgtgtctctctctgtctgtgtggccGTGGGTCTCTggatgtgtctctctctgtgtctgtgggtctctggatgtgtgtttctctcttcttcctcctctatctgtgtttctctgtctcttcctcttccccacccaccctctctctctgctcaggGCTCAGTGTGCAGTATTGCAGTCAGTTGACCCGGCTCTAGCGCTGTGGGGAGACTGAGTGGCTGAGCACTGGAAcatgtccagtccagtccagtctgaGAATGTGTGTTTTCAGAGGGACAGCTGAAAAGCAGCTCAGCTGTGACACGAGGGCCGGGCAGAGCTGGCAGAAGTAGCACGACAGCTTCTACAGAATGCTACGAGCTTGCATCAACTCCTGCTTATAGTTTATACTGTTGAAATGTTAcggttttctgcttttttattttattttctccaagtTCGGTATCTTTGAGGCGCACATGGTGATACATTTGGGATTTTTCTCGGCTTTGGGGGATTTCCCATTGCGGTTGATATcctgaaaatgttgtattggAATGTATAGTGTTCCTCCGGTTATCTCTCTCGCTATCTGTCAAACACACTGTCTCCTGTCTGttacaggacaggacaggacagagagagagagagaggaatggatAGAGCCAGTTAGACACTTAGAGGGAGGGTCAGAAAGTGATAGAGAAGAGATAGACataagacacagagagagggatatacatggagagagagtgagaagagagagatgtacagataaagagggagagaggcagaggagtGGGGAACACAGCAGACAAGGTGTATTACAAGCTGGCTTATTAGAAATGGCTGCAGAAGTGTTACAGAAATCATGAGAAATAAGacttctatatttatatattttttaagagcCAAAAAGGCAGTTTTGTTATCTGTCCGTCTCAGACTGTTATGTTTTGGATGCTGTTTGAAAGCTTCAGTTCATTGTTTTATACTGAAAACTGTATTAGGGACAAGCCAGGCAACAGTGTTgaatactgtacaatgcaataaACTGATTctgtttgtaatataaaataacaaaca

Function

GO:

id name namespace
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136194 lncRNA upstream 8444 2008087 ~ 2033572 (+) True G108856
TU136191 lncRNA upstream 30208 1991615 ~ 2011808 (+) True G108854
TU136184 lncRNA upstream 88974 1952214 ~ 1953042 (+) True G108847
TU136169 lncRNA upstream 148529 1892863 ~ 1893487 (+) True G108833
TU136168 lncRNA upstream 149591 1891036 ~ 1892425 (+) True G108832
TU136219 lncRNA downstream 52465 2098349 ~ 2128000 (+) True G108878
TU136226 lncRNA downstream 82434 2128318 ~ 2130263 (+) True G108884
TU136237 lncRNA downstream 114093 2159977 ~ 2252346 (+) True G108890
TU136236 lncRNA downstream 204683 2250567 ~ 2289455 (+) True G108889
TU136264 lncRNA downstream 214058 2259942 ~ 2262497 (+) True G108914
AMCG00006308 mRNA upstream 133930 1896505 ~ 1908086 (+) True AMCG00006308
AMCG00006303 mRNA upstream 154446 1883754 ~ 1887570 (+) True AMCG00006303
AMCG00006301 mRNA upstream 161936 1877557 ~ 1880080 (+) True AMCG00006301
AMCG00006306 mRNA upstream 176710 1860979 ~ 1865306 (+) True AMCG00006306
AMCG00006300 mRNA upstream 235976 1805301 ~ 1806040 (+) True AMCG00006300
AMCG00006311 mRNA downstream 14315 2060199 ~ 2068535 (+) True AMCG00006311
AMCG00006312 mRNA downstream 22866 2068750 ~ 2073323 (+) True AMCG00006312
AMCG00006310 mRNA downstream 34648 2080532 ~ 2089002 (+) True AMCG00006310
AMCG00006317 mRNA downstream 88472 2134356 ~ 2137701 (+) True AMCG00006317
AMCG00006318 mRNA downstream 108513 2154397 ~ 2171374 (+) True AMCG00006318
TU135896 other upstream 229341 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 302749 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 612029 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 755964 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1051194 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 1315470 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1457297 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1524155 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1553357 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1591859 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027500 True 3850 mRNA 0.37 4 NC_007130.7 816208 ~ 822275 (+)