RNA id: AMCG00006310


Basic Information

Item Value
RNA id AMCG00006310
length 3324
RNA type mRNA
GC content 0.63
exon number 8
gene id AMCG00006310
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2080532 ~ 2089002 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGCCGGGGCCTAATGACATGTGCCGGGCGTGTGGCTCAGCCCTGAAGGGCACCCGCAGGCGCTGGATCTTCGGGGGCCAGAAGAAGGAGCCACACAGGGCCAACGTGACCCCCAATGGCGGCCTGTCGCGCTCCCGGGCCTCCAGCCGCTCCTGGGGCAGCTCCCCTTCCCTGtgctccccctccctctcctccgcctcctcctcctcctccgccgccGCCCCGTCCCCCCCCGGCCACAAGATGGACCTGCTGGCGGTGCTGACCCACGTGCTGGGCCGGGCCGTGCCGCGCGGGGACGGCCGAGGGGAGTTCCTGTGCGGGAAGTGCGTGTCGGCGCTGGAGCGCGTGTTCCGCTTCGACGCGGTGATCGCCCGGGTGCGCGCGCTCTCCTCCGACAAGCTGCGCCGCCTGGAGCAGGAGAGGGACGCGCTGGGGCGCTGGCTGGCCGGGGTCTATGCGCAGCGCCACCCCCAGGACCCGAGGGGCCACGCCGGGGGGTCCGGGGAGGAGGACGGGCAGGGGGAGGGAGCCAGCGGGGCCTACAGGCAGCTGCTGCGGGACAACATGGCGCTGTCGGAGTTCGAGTGCTGGTCAGAGAGGTGGAGCTCCTGCCGGGAGGCGCGGGGCTGCCGGGGCGGCTGCGGCGGGCGGAAAGGCTGCGAGGGCTGCGACTCCCTGCGCGTGACCGACTCAGCCTACGAGTCCGTGGTGGGCCTGCCCCGCCGGCTGCCCCGCCCAGCCGCGCCGCTGGCCCTCTCCCGAGACAAGTCCCGCAGCATGCCCCTGGACTGGCTGGGCCCCTCCGCCCGGCACGGCTCCggctcctcctgctcctcctcctccacgcTGGGCGGGGCCGGGCAGGGCTCCCTGGGCTCCTCCCTCCGCGGCTCCAGCCAGTCCCTGATCTCCGGCCCGGCCTCCCGCTCCGCCTCCCTCCTGTCGCTGGACTCGCTGGGCGGGCCGGACCCTTTCGACTGGCCGGAACCCGAGTCACTCGACCTGACGGACGTGCTGAGCCGCCTGAGGAGGGTCCGGTCCAGCCCGGTGCGGACCCCGGCCGGGAGCAGGATCCCTGTGAGAGTCGGTCCGTCccagagagggggtggggtggcagCGCTGGTGCGGGAGCTGGAGtttggagaggaggaggggaggagtaACGGCACggagggagaagagagggatGTGCTGACCGAGCTGGGAGACGAGTACCTGCCGCTGCACAGAGAGAGGAGCGCGGGGCGGCAGCACATGCACAACGCAGTGAGGCAGCTGAGAGGGCAGCTGGATCAGGCGCAGGCCCAGATCAGGACCCTGCAGGCCCAGCAGAGGGGCGTGGCCACACTGACAGAGGGCGTGGTCAAGCTGATGGTCAGGCTGGGACAGAGCCTGCGCTGCAAGGAGCAGGTCATCCAGaacGCTGTGGACAGTCAGCTCAGTGAGTTGAGGCAGCGGGATCAGGAGCTGGAGTCTCTGCGTCGAGCCAACCGGgagaaggacagagacctgAGCCGCCTCAACACAGTGCTGCACAGCAACCTGGACACCATCGcggagctGCGTGCCGAGCTGTCCCGGCTGACCCAGGCGCTGGAGGAGCGAGGGAGGgcggcggagagagagagggaggcctGGCGCCTCAGAGACAGCCTGCACCGCTCTCTGCTGAAGGACAGAGACGCCCTCGTCGGCAGCCTGCAGGGGGCGCTCAGCACCAGCCAGAAAGACGTGCAGGCGCTGTCCCAGTCAGTGATGGGTCTGGGCGTGGAGGGGAGCGGGGCGGAGGGCCAGCTGGCTGGGCGGCTGCAGGAGAAGGAGGCCCTGCTGGAGCGCCTGCTGAGGGAGCAGAAGGAGAAGAGCGAGGCCAGGTGGCAGGAGGTGGAACAGCTCTCCGCCGTGCTGGACGACACCATGGCCACTATACAGgtGCCGAGTGACGGTCAGGCGGTGTCCTCAGTCTGGGCTCAGCTGGGGGAGGCCCGCAGGcagctgagggagagggagagcgagggcagagagagggagagggagtggcgcagcgagagggaggagagagagcgagaggagcGAGTGTTGAGGGAGAGCCTGGAGAAACGAGACAAGCTCATACAGCAAGTCCTGAGTGACTCGGAGGAGAGGGAGCGGCTGCTGAGCGACCTGCAGCACAGCCTGCTGACCCTGCAGGAGCCCCGCACTGCCCTCAAACACACCCTGTGACCGAGACTGGGAGACAACACAACTGTACAACTGCcttacagagagacagagagactgggAGACAACACAACTGTATAACTGCCTTACAGACAGAGACATTGCCTAGCACTAGACTTACAATAGAGCATAATACTGGAATAGGTCCACTTCCTATAGACTCCCTCACTGCCGGGAGGGTGGATAACCAAtcccagacagagagacagtcagAGTCACGGCCACAGCTCTGCCAAAGACAAGGTCGGGGGGCGTTGGATCTGGATGAGCTAATATGAGATGCCTCCTGTATCTGCCAGTTTATACAGGGAGGCCCCCCTCCCCCGTCCCCTCTGTGAGTGAACTGGATGAATGTCAGAGAGAATCGGGGACTGGGGACGGGTGTGGTGACGGGGGGTGACGTTGCTGAAAGGTGTCAGTCAGTGATGTCAGTATTTATCTTGTCACTCACTGTCTCTGAGTCTCTACTGTAGCTGCCAAATACTGACTCTGGAAAACTCCCAGTCCACTGCACACTGATCCTGACtgtgggtgtgtgagagagctgCTGCCAAATACATCCCCTGGGGACGATTAATACtgcattcacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccctctctctgtctctcacacacacacacatttctctgtGCTGACCTCCTGCTCTTGGGGTCTCTGGGACACAGTTAGTTTCTAGTGTGATAGAGTAGTGACGATACGGGGGAGGGTCTTACAGGGGCGGTGTCTAGGGTCcagtgtactgtatttaaatgattgagCTGCATGGTAATTCTTGCACAAGGGGCGGTGGGGTGTGCCTGGGGTGTTACAGGGCTGAATatctcccacaatgcactcAATGCATAACCTTTATTTTAAAGCCATAATCTCtctttacaaaagaaaaataataatatataagcTAAGGTTATGATTGTGACTGCCAGGGGAAACGCATGTCCGAGTGAGGTATCTTTTCTGGGGGGTGGGGTTaagacttatttttatatactttgAATCTTTCCTGTTCCTGTTATTATAAAGCTGTACAGAATCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136194 lncRNA upstream 46960 2008087 ~ 2033572 (+) True G108856
TU136191 lncRNA upstream 68724 1991615 ~ 2011808 (+) True G108854
TU136184 lncRNA upstream 127490 1952214 ~ 1953042 (+) True G108847
TU136169 lncRNA upstream 187045 1892863 ~ 1893487 (+) True G108833
TU136168 lncRNA upstream 188107 1891036 ~ 1892425 (+) True G108832
TU136219 lncRNA downstream 9347 2098349 ~ 2128000 (+) True G108878
TU136226 lncRNA downstream 39316 2128318 ~ 2130263 (+) True G108884
TU136237 lncRNA downstream 70975 2159977 ~ 2252346 (+) True G108890
TU136236 lncRNA downstream 161565 2250567 ~ 2289455 (+) True G108889
TU136264 lncRNA downstream 170940 2259942 ~ 2262497 (+) True G108914
AMCG00006312 mRNA upstream 7209 2068750 ~ 2073323 (+) True AMCG00006312
AMCG00006311 mRNA upstream 11997 2060199 ~ 2068535 (+) True AMCG00006311
AMCG00006309 mRNA upstream 34648 2042016 ~ 2045884 (+) True AMCG00006309
AMCG00006308 mRNA upstream 172446 1896505 ~ 1908086 (+) True AMCG00006308
AMCG00006303 mRNA upstream 192962 1883754 ~ 1887570 (+) True AMCG00006303
AMCG00006317 mRNA downstream 45354 2134356 ~ 2137701 (+) True AMCG00006317
AMCG00006318 mRNA downstream 65395 2154397 ~ 2171374 (+) True AMCG00006318
AMCG00006324 mRNA downstream 102523 2191525 ~ 2192885 (+) True AMCG00006324
AMCG00006323 mRNA downstream 115895 2204897 ~ 2205971 (+) True AMCG00006323
AMCG00006327 mRNA downstream 277290 2366292 ~ 2371085 (+) True AMCG00006327
TU135896 other upstream 267857 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 341265 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 650545 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 794480 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1089710 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 1272352 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1414179 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1481037 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1510239 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1548741 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile