RNA id: AMCG00006311


Basic Information

Item Value
RNA id AMCG00006311
length 3945
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00006311
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2060199 ~ 2068535 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGACGAACAAGCAATACTGCACCACCCCTGAATGCGCAGCACTGCGCCTGCGTGCGGCCACACCGGAAACACTTCCCCAGGGTGCGGCCGAGCGTCCTGCTACAAGCCTCAGTCTGCAGCGCAGAGGTCTCTCCTGCGGCGCCAGGGAGCTGCAGCAGACGAGCATCCCCGCCGGCGCTTTCTGGGGCGCCTCCGCTCGGAGTCCTCCGGTACCCGAACCTGGCCCTCTGCGCGGAGCTGGACACGGCGCCCCGCTCGCCCGATTGCACAAGTGCCCGCCCCGCCGCAGCTCCGGCACAGCGGATCTCCGGATCTCCACACACAGCACGATGCTCAGACTCGACCCGGCGTGGCTGCGCCGCGGAGGCCAGCTGTGGACGACGCTGTCCCGGTACCTGCGGGCGCTGGAGCCCCACCTGCCCCCCAGCGAGTGGCAGCAGGCGCGGGCGGAGCTGCAGGAGTTCAGCCGGCAGGGTGGGGCCGGAGAGGGGCTGCAGAGGAGCCTGGAGAGGAGAGCGCAGCGCATGCACAACTGGgtCTCGGAGTGGTGGCAGCAGTCAAACTATTTGGAGAGCCGACTGCCCCTGGCTGTTCACTCGAACCCGGCCGTCGCCCTGCCCCAGCAGGACTACAGCGACTGGAGGGGACAGCTACTgtTTGCAGCGAAGCTCATAGCAGGAGTCCTGGACTTCAAAGCCAAAATTGACAGtcACGCTCTGCTGGTGGAGTACATGCGTGGCCGGCCCCTGTGCATGGAGCAGTACAGCCAGGTGTTCTCGTCCTGCCGTGTCCCGGGGCCGAAGCACGACCACGTCCTCCTGTACAACCGCATCCGCCGGCCGCCCACCCACATCACCGTGGTCCGGAACTTCCAGttctTCCAGCTGGAGGTGTATAACAGCGACGGCTCCCCTCTGACGCGCGCTCTGTTCGGGGTGTGTCTGGACGCCCCGGTGATGCGCGTGTCCGAGGGGCGCTACTCCAGCCGCATGGCCGCCCAGGTGCTGCATGGGGGCGGGACCTACTCCAACAGCGGCAACCGCTGGTTCGACAAGACCCTGCAGttcatcGTGGGGGAGGACGGCTCGTGCGGGGTGCTGTATGAACAGGCCATAGCAGAGGGCCCCCCCATTGCTACCATCGTCGACCACGTACTGGAGTACACtaagCAGCCGGAGACCGTGCGCGCCCCCATGGTGCCCCTCCCCCACCCGAAGAAGCTGTACTTCTACATCGACCCCGAAATCAAGAGGGACATCGAGCTGGCCAAGCAGAACCTGGACAGCCTGATTAACGACCTGGACATCAGCTGTTTCACATTCCGGAAGTTTGGGAAGAACTTCCCCAAAAAGCACCGGCTCAGCCCCAACTCCCTGATTCAGACTGCCCTGCAGCTCGCCTACTACAGGATGTACGGGGAGCTGGCCGTAACGTGTGAGAGCGTGTCTCTGCGCATGTTCCGGGGCGGCCGCACTGACACGGTCCGCTGTGCCACCCCTGAGGCCCTGCGTTTCGCCCAGGCCGCTGACGACCCCTGCGTCATGAGGGAGATGAAGGTGGCTCTGCTGAAGGAGGCTGTAGAGGCTCACAGCATCCTGACTGAACAGGCACTCCAGGGTCAGGCCATTGATCGCCACCTGCTGGGCCTGAAGCTGCAGGCCATCGAGGACGGACGGACCGTCCCCACACTGTTCATGGACACAGCCTACGCCATCGCCACACACTGGAGACTCCGGACTGGACAGGTGGCCTCTCGCACGGACAGTGTCATGTGCTTTGGGCCACTGGAGCCCGATGGCTACGCTGTGTGCTATAACCCCATGTCTGAGCACATCAACTTCTCCGTCTCGGCCTTCAACTGCTGCGAGCAGACGCACGCGGAGAGGCTGGCCCAGGAGATCCGCAGAGCCCTCGGTCACctgcaggagctgctgcagcCCTCCCACACGGCCTgaggcagagagggggagggagagagggaagggcgGAAAGAGGAAAAAGGTGGACTGAGACGGTTGTAACTGCTGCCTGACTTTaacaacacagcactgcactgtacacagcagtcacagagacgcacacacactgcattctcacacaaacacacacacaccatgagACAGGCTGACggatacaaacatacacacagaccgactgacagacatacagactgacagacaggcagacaggcagacaaacACGCTTCGGATCTGAGTTTTGAGGATTCCATTGACTGGTAGAGAGACTCAGAATGCTTGCAGCTGATTGGTGGAGAGAGATTCTAATTGGAATACAAAACCGAAACCTCTCATCCTGGAtatatgcaaacaaaacaaaaccaagaaaaacGTGATTGGTTGGAAGGGACTGCAGGGCTTAGCACCCATTGGCTGGGACATTTGTGTCCTTAAATGCTATTGGCTGGATGATGTTCTTACCTCAAAGGCCATTGATTGGCTGTCCTTCAAAAGCATTAGCTATTATTccaaaaaagattaattattcTTCTGGTGATGAGTGATTGACTTGGAGAAAGTCTATTGGCTGGAAGAATACATTTCATAGGATGGGATTGAATGGGAGAAAAGGCCCTTGTTGGCTGAGACATGGACACGGGCTCAATTGGACAGGACCAAAGCAGCTGGAGAGAGGCCATTGTCAGGAACACTCCGGCTCTTCTGTGTGATTGGCTAAAAGATACCAATGGTGAGATGCAATTTGCCGGAACGATTGTTCTGGGGGAGCTGATTGACACTTGTCCCCAACAATAATTAAAGCATTGAGAATTTTGACCAAaatactaatgaaaataaactacattttggagttaattaaatatttctgtacTATCCTGGTGTTCTGTGTTGTCTTTGcagtagaaaaatacataattctgGTCGGGGAGAAACTTCAGAAGACGTCTCCTCCCCACCTCCTTATTCTTCTTCTGTATCCAGTAAGAGCTGAACATGTTTTAGCTGTGACTTCAGAGGTGACAAAATGCCCTACAATCCTAATTTCCCACCAGTTGTGTTGAGGAAGTATTCAGCTCACATACTGCGTGCAGGATATTATTTTGGCTTTACGTTCAGGTTAATAGACATTAATTGTTAATCTAGATTAGTGAGGGTATCTGTTGTTTTCAGTAGTTCCTTCCCTCCATTCTGTCTAGTAGTATTTGgtttagtttaatacatttacagctgTGTCCAAGTGAGCTTAAAGGTTAACCATCCTACAGTAAGAGCAATAAAACAATGCGTATGTGCACCTTGCCTGTCTCTGTACACTAGTACTCATGGGAGGAGGCGGATAGGGTCCCTATATGACCGTCATTAATTCCATAGCAGGGTGGAATGTAATTACATGCAACGGTACCATCTGATCTCTGCAACAGCGTTCCCTGTTCGTGCTCTGTGTTTTACCACTGTCTGGGAGGCCTGcattttatagttattttactGTAGCTGCTGAACAAAGATCACTTGCCACAAATGAAAACGGAGGAAGCGGATACTTTCGATATGCCGCAGCTATCACCTGCACTTCTCTAAGATTTACGAGCTGTTTTCGGGAGTGTTGGGGGGGAGTGAGTCTTGTATATTCCTTGTTCCACATCCTTAAAAAAGACTAACAATTTCTAAAATGTTACgttctttacaaaaataacatttaaattacatttgcattgcatAGACTTTGTTGATTTTGCTGGTCGACAGGTTCAAGAAGTCTAACGAATCGTGTTGCCACACGTGGGTGGGTTTGTGTTTGTAGGTAAGTTAAATGATCTCTAAGATTTTTAGATAGTTTGTTGGTAGGCAGAAGCAGAGATGTCTGTCCACCTCCTTTAAACATACTAAAAGAAATGGAGATGTTGTACTTGTGAAAGTAGACTTTGGCCAGCACAATTCAAGTTGTGTGGggtaaacaaatataat

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136194 lncRNA upstream 26627 2008087 ~ 2033572 (+) True G108856
TU136191 lncRNA upstream 48391 1991615 ~ 2011808 (+) True G108854
TU136184 lncRNA upstream 107157 1952214 ~ 1953042 (+) True G108847
TU136169 lncRNA upstream 166712 1892863 ~ 1893487 (+) True G108833
TU136168 lncRNA upstream 167774 1891036 ~ 1892425 (+) True G108832
TU136219 lncRNA downstream 29814 2098349 ~ 2128000 (+) True G108878
TU136226 lncRNA downstream 59783 2128318 ~ 2130263 (+) True G108884
TU136237 lncRNA downstream 91442 2159977 ~ 2252346 (+) True G108890
TU136236 lncRNA downstream 182032 2250567 ~ 2289455 (+) True G108889
TU136264 lncRNA downstream 191407 2259942 ~ 2262497 (+) True G108914
AMCG00006309 mRNA upstream 14315 2042016 ~ 2045884 (+) True AMCG00006309
AMCG00006308 mRNA upstream 152113 1896505 ~ 1908086 (+) True AMCG00006308
AMCG00006303 mRNA upstream 172629 1883754 ~ 1887570 (+) True AMCG00006303
AMCG00006301 mRNA upstream 180119 1877557 ~ 1880080 (+) True AMCG00006301
AMCG00006306 mRNA upstream 194893 1860979 ~ 1865306 (+) True AMCG00006306
AMCG00006312 mRNA downstream 215 2068750 ~ 2073323 (+) True AMCG00006312
AMCG00006310 mRNA downstream 11997 2080532 ~ 2089002 (+) True AMCG00006310
AMCG00006317 mRNA downstream 65821 2134356 ~ 2137701 (+) True AMCG00006317
AMCG00006318 mRNA downstream 85862 2154397 ~ 2171374 (+) True AMCG00006318
AMCG00006324 mRNA downstream 122990 2191525 ~ 2192885 (+) True AMCG00006324
TU135896 other upstream 247524 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 320932 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 630212 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 774147 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1069377 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 1292819 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1434646 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1501504 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1530706 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1569208 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile