RNA id: TU136306


Basic Information

Item Value
RNA id TU136306
length 1538
RNA type TUCP
GC content 0.51
exon number 3
gene id AMCG00006313
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2020001 ~ 2024143 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaggggggagCGACAGCAGAATCTCAAGaaccagagagagcgagagagagagagaggggacccATGGAGAGAGGACACGTACAGCCTTGAACTGAAACgggaaagagagcaagagaggaggAAAAATTACCTAGAGGGAGAACTGAGAGGGAATTCAgcctggtgagagagagagagaaagtggaggaagaggaagaggagagggagaagtagaaaaataaaagggaagaGGTAGAGTGTGTCCCTGTATTGGCCGGTGGAGCAGGGCAGGGGTTTGGGGTGCTGTACCCTAGTGAACTGTAGTGTGGTGTGCTGTACTGTTTGTGTGGACTCTACTACAGTGTAGTGTGCTATAGTGCAGTATTGTGTAGCGTATGTGCTGCATCAGAGAGCTGCTGGACTGACCAAGTGGAGCCACGTCTTGGTAGACAGAGCAGGAGCACAGACAGACGGTGAGGAGGACAGGAGAGACACAACGCAGACAGAGCCTGAGCtcacagGACTGCTTCCTCTCCTGTCTCGTCTTCCTCCACCTCCCACTGAGGGCTGCCGGTCCATCGCCATGCCTACGGAGGCAGGGAATGGGGGGGACCTTGGTGATGGCAGCAGGAACCATGGCGATGGGGTCCATAGTGACAGCCAGAGACAAGAAcgacaacaacgacaacaacaacaacaacaacaacaacaacaacaacaacaacaggccCTCAAACAAGTCAGCACCACCGCAGACAAAACAGAGAGCAAGAAGACCAGAGAGAAGAAGTCTGAGAAGCGGAAGAGTTTGAAGGAGgagaggaaaaactTCAGATGTCCCTGTGTGAGTCTGCCTGTCAGCCTTGCCTTTCTGTTTCTCACACTGGAGTGACAAGGACACCTGAGATCTGGTGGGTCTCAGTGGGACTCTCCTCTTttcactgaactgaactgcaatGCAGCATCACTGAATTACTGAGACCCTGCACACAAGGGTCTGCAACcaagagagacactgagacagagacaaagacaTGAGGATACAGAGAGAGGCACAAAGTCAGTGTTGTCACAGTCGTCTCTGTGGGTGGGACGGGGTGGGACGTGGTGGGACAGGGGCGGGGAGGGTAGGAGCAGCCTGCTTGGATTTTCGgtcagtggtctggagggaaaCAAGGCCTTTTTCTTATGAGTAAATTGTATCCCCAGTGCGTGTAGACCTGATATGATGTGATGTTCTGTTTTAGTGGATGTTCACAGTATAGTGCAATAGGAGGTCCTCGCACAATTCTCAATGAACAGAAATGAAGCGCTGTGATTGGGTAGCGTTGACCTCAGCAAGCTGTAGCAGCCAGTGCAATTCCACCCTCGTTCTGGAAACTCTAGAATGTTCTTTCTCTTCTCACTTCCTTGTCTGTGTggttgtggtttgttttaagGGGCGAGGGGGAGGACAACGACATGGTGTTTACTGGGGTGCACACAGCACTGTAAATGTAtctgagtctgtgtgtgaaGGCCCTGGCTGTGCAATGCAAACCCCCCAATAAAGCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136170 lncRNA downstream 133725 1885965 ~ 1886276 (-) True G108834
TU136135 lncRNA downstream 236435 1734195 ~ 1783566 (-) True G108805
TU136111 lncRNA downstream 298870 1719629 ~ 1721131 (-) True G108789
TU136114 lncRNA downstream 349370 1664948 ~ 1670631 (-) True G108791
TU136113 lncRNA downstream 356968 1661753 ~ 1663033 (-) True G108790
TU136316 lncRNA upstream 28848 2052991 ~ 2057622 (-) True G108948
TU136289 lncRNA upstream 73675 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA upstream 103650 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA upstream 103650 2127793 ~ 2130255 (-) True G108938
TU136514 lncRNA upstream 322379 2346522 ~ 2390552 (-) True G109090
AMCG00006315 mRNA downstream 3067 2011362 ~ 2016934 (-) True AMCG00006315
AMCG00006314 mRNA downstream 20711 1991302 ~ 1999290 (-) True AMCG00006314
AMCG00006307 mRNA downstream 87599 1930634 ~ 1932402 (-) True AMCG00006307
AMCG00006305 mRNA downstream 149270 1866559 ~ 1870731 (-) True AMCG00006305
AMCG00006304 mRNA downstream 201633 1808656 ~ 1818368 (-) True AMCG00006304
AMCG00006316 mRNA upstream 2993 2027136 ~ 2034235 (-) True AMCG00006316
AMCG00006320 mRNA upstream 73430 2097573 ~ 2099149 (-) True AMCG00006320
AMCG00006322 mRNA upstream 75024 2099167 ~ 2102889 (-) True AMCG00006322
AMCG00006321 mRNA upstream 100229 2124372 ~ 2128938 (-) True AMCG00006321
AMCG00006319 mRNA upstream 112681 2136824 ~ 2140157 (-) True AMCG00006319
TU136165 other downstream 138164 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 295153 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 359997 1646480 ~ 1660004 (-) True G108784
TU136071 other downstream 465337 1350485 ~ 1554664 (-) True G108755
TU136304 other upstream 73675 2097818 ~ 2130255 (-) False G108938
TU136502 other upstream 299988 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 2140791 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3989961 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4761170 6785313 ~ 6785851 (-) True G110140

Expression Profile