RNA id: AMCG00006315


Basic Information

Item Value
RNA id AMCG00006315
length 1158
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00006315
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2011362 ~ 2016934 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACCTCTCCGTGACAGGTCGTTGGAGCGGGTGTAGATACTGCCGGGATGCGCAGCTGTACCGGACACGCAGTGGAAGCGAGCAGGTCTGTGCGAGGGGCGAGGGGTCACCTGACACACCCACTGTGTCGTGGACAGCACCCCTCACTGTGCTGACCACGGCCCCCGGCAGCTTCACTTGCGCATTGTTGGATCACTGGTTACGCTTCATCCTTGTGGCCGTGCAGGTGCAGATCGCCTCCCAGCCTATTGTCtttgtgttggtgttggtggCGGACTCTGGCACGCTGCCCTGTAACGGGACTGCCTACGTGGGGGTCCCTGTGCAGCAGAGCCACATCCTCTGGCAGACTGCGGACCGCCGGGTCTTTGAGTTCAGCGCGGGACGGGTCCGCCCTGGCACCGGGTTCGAGGGCAGATCTGAGATGTCCAgcgagaagatcagacaggggGACTTCTCTCTGACCATTCACAATATCTCCTTCTCTGACGAAGACACTTACGAGTGCTACTGGGAGGCAGACAAGGAGCATTTCCTGGGCAGCGTCCCACTGTTTGTTGAAGCTCACAGATACAACCTCACCCTGCAATCCAGAGCCAATCTGACCCTCCTTCTCCACTCCAGTGCACCAGTGGAGGTGCTGTTTACTCCCGCAGGATCTGCTGAGCCTCCCAGATTCTTACTAAACAATACAGGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGACCCTGCGCTCACTCACAGCAGCTGACCAGGGAAACTACACAGTGAGGGACTGCAGCACCGACCGCACCATCAGCaccgtctctgtgtctgtggagGCTCACAGTGACTCCCTCATCCTGCCGCCTGGAGCCAATCTGACCCTCCGCCTGTTCACTGCAGAGCCAGTGGaggtgctgtttgctgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGCGAGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGACCCTGCGCTCACTCACAGCAGCTGACCAGGGCCAGTACACAGTGAGGGACCTGCAGGGACACACCATCAGCACCGTCTCTGTCTTGGTGGAAGGCTGGTGTGGCTCCAGTCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136170 lncRNA downstream 125086 1885965 ~ 1886276 (-) True G108834
TU136135 lncRNA downstream 227796 1734195 ~ 1783566 (-) True G108805
TU136111 lncRNA downstream 290231 1719629 ~ 1721131 (-) True G108789
TU136114 lncRNA downstream 340731 1664948 ~ 1670631 (-) True G108791
TU136113 lncRNA downstream 348329 1661753 ~ 1663033 (-) True G108790
TU136316 lncRNA upstream 36057 2052991 ~ 2057622 (-) True G108948
TU136289 lncRNA upstream 80884 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA upstream 110859 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA upstream 110859 2127793 ~ 2130255 (-) True G108938
TU136514 lncRNA upstream 329588 2346522 ~ 2390552 (-) True G109090
AMCG00006314 mRNA downstream 12072 1991302 ~ 1999290 (-) True AMCG00006314
AMCG00006307 mRNA downstream 78960 1930634 ~ 1932402 (-) True AMCG00006307
AMCG00006305 mRNA downstream 140631 1866559 ~ 1870731 (-) True AMCG00006305
AMCG00006304 mRNA downstream 192994 1808656 ~ 1818368 (-) True AMCG00006304
AMCG00006298 mRNA downstream 287960 1722847 ~ 1723402 (-) False AMCG00006298
AMCG00006313 mRNA upstream 3960 2020894 ~ 2021865 (-) False AMCG00006313
AMCG00006316 mRNA upstream 10202 2027136 ~ 2034235 (-) True AMCG00006316
AMCG00006320 mRNA upstream 80639 2097573 ~ 2099149 (-) True AMCG00006320
AMCG00006322 mRNA upstream 82233 2099167 ~ 2102889 (-) True AMCG00006322
AMCG00006321 mRNA upstream 107438 2124372 ~ 2128938 (-) True AMCG00006321
TU136165 other downstream 129525 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 286514 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 351358 1646480 ~ 1660004 (-) True G108784
TU136076 other downstream 500822 1368082 ~ 1510540 (-) False AMCG00006279
TU136306 other upstream 3067 2020001 ~ 2024143 (-) True AMCG00006313
TU136304 other upstream 80884 2097818 ~ 2130255 (-) False G108938
TU136502 other upstream 307197 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 2148000 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3997170 6014104 ~ 6016943 (-) False AMCG00006491

Expression Profile