RNA id: AMCG00006318


Basic Information

Item Value
RNA id AMCG00006318
length 1482
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00006318
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2154397 ~ 2171374 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTCGTCCTGTCCGTGGCACGTCTCTCAGTCCCGCCTCGGTGTGTCCCCGTGTCCTGCTCGTGTCCCTCTGTGGCCGTGAGGAGAGCGCCTCTTTCTCCTGTGGGCAGCCTCTGAGCCTCTGTCTGTACAGCAGGGCAGCTGTGACTGTGTGGTTTAACCCTGCGGGCGCCGGCGCCTCTCTCCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGCCCCGAGTCTCAGCGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGGCTCCTACACAGTGCTGGACTCCCAGAGCAGAGCGACCATCAGCACTGTGAACGTCACTGTGACAGgTCACACAGCAAATCACATTCTGAGCTCTGGACAggacctctctctccctctgtatgGCCTCAGCAGGGCGGAGGTGCTGTTCTCCAGCAGTGCAGCCGTCTCAGTGTGCGCTGTGGAGAGCGGCGCAGCGAGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGAACCTGCGCTCACTCACTCCAGCTGACCAGGGCCAGTACACAGTGAGGGACTGCAGCaccgtctctgtgtctgtgtctccaTCCTCTCTCCGCTATGCTGCTGTTGGCCTTGCTGACTCTCACTCTGAGACTAGACGACCAGTCAGGTTATTTATGACTTCGACAAAGGCCGATTCCAGCCTGGGCCCGGGTTCGAGAATAGAGCCAAGGTTCCCCTGGAGAGGATCAGACTTCTCTCTGACCCTCCACCCCACCTGCTTCTCTGATGAAGATGTCTATGAGTGCTACGGGATCCAGAGTGACAACAAGGAGTTTCTAGGGGAAGCCCACCTGGCAGCTGTGACTGTGTGGTTTAACCCTGCGGGCGCCGGCGCCTCTCTCCCAGTGAGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGCCCCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGGCTCTTACTCCCAGAGCAGAGAGACCATCAGCACTGTGGCCGTCACTGTAGGACACAGTGACTCCCTCACCCTGCAGTCTGGAGccgccctctccctccccctgttCACTGCAGAGCCAGTGGaggtgctgtttgctgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGCGAGCCGCCCTGGCCCTGGGTACGAGCACAGAGTGTCAGTGCAGGCCAAGGAACTGAAACTGCGGGAAATGAGAAAAGCCGACCAGGGCCAGTACACAGTCTGGAACCTGCAGGGACGCACCATCAGCACCTCAATTCGATTTTGTGAAGGCAGACTTGCCAGACCAGACACAGACCACTGGCTACAGGAACGGACTCCAGACAGCTCCTGGCCAGACCTCAGCACTGAtcacacagagagacggagCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136226 lncRNA upstream 24134 2128318 ~ 2130263 (+) True G108884
TU136219 lncRNA upstream 26397 2098349 ~ 2128000 (+) True G108878
TU136194 lncRNA upstream 120825 2008087 ~ 2033572 (+) True G108856
TU136191 lncRNA upstream 142589 1991615 ~ 2011808 (+) True G108854
TU136184 lncRNA upstream 201355 1952214 ~ 1953042 (+) True G108847
TU136236 lncRNA downstream 79193 2250567 ~ 2289455 (+) True G108889
TU136264 lncRNA downstream 88568 2259942 ~ 2262497 (+) True G108914
TU136373 lncRNA downstream 121323 2292697 ~ 2292896 (+) True G108987
TU136392 lncRNA downstream 179380 2350754 ~ 2356238 (+) True G109004
TU136402 lncRNA downstream 231529 2402903 ~ 2403151 (+) True G109010
AMCG00006317 mRNA upstream 16696 2134356 ~ 2137701 (+) True AMCG00006317
AMCG00006310 mRNA upstream 65395 2080532 ~ 2089002 (+) True AMCG00006310
AMCG00006312 mRNA upstream 81074 2068750 ~ 2073323 (+) True AMCG00006312
AMCG00006311 mRNA upstream 85862 2060199 ~ 2068535 (+) True AMCG00006311
AMCG00006309 mRNA upstream 108513 2042016 ~ 2045884 (+) True AMCG00006309
AMCG00006324 mRNA downstream 20151 2191525 ~ 2192885 (+) True AMCG00006324
AMCG00006323 mRNA downstream 33523 2204897 ~ 2205971 (+) True AMCG00006323
AMCG00006327 mRNA downstream 194918 2366292 ~ 2371085 (+) True AMCG00006327
AMCG00006330 mRNA downstream 220345 2391719 ~ 2396364 (+) True AMCG00006330
AMCG00006334 mRNA downstream 356857 2528231 ~ 2539840 (+) True AMCG00006334
TU135896 other upstream 341722 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 415130 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 724410 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 868345 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1163575 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 1189980 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1331807 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1398665 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1427867 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1466369 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile