RNA id: AMCG00006319


Basic Information

Item Value
RNA id AMCG00006319
length 2146
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00006319
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2136824 ~ 2140157 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTGGTCATGAAGTGTTGGTGTTGAGCAGTGGATCACTGTTTCCAGGCCCAGGGTTCGAAGGCAGAGCTGAGGTCCCCACAGAAAAAATCAGACAGGGGGACTTCTCTCTGACCATCCACCGCACCCTGCTCTCAGATGAAGGCCTATACGAGTGTTTATACGAGGGAGCGAATGATGAAATGAAGTTCCTGGGAGACGTTTATCTTGCTGTAACAGCTCGTCAAGACTTCCTCACTCTGCGGTCTGGAGCCaatctctctttccctctccacTCCAGCGCTCCAGTGCaggtgctgtttgctgctgcaggATCTGCTAAATCTCCCAGAGTCCTACTGAACAGCTCAGGGCTCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAAAGCGGCTCTCTGACCCTGCGCTCACTTACAGCAGCTGACCAGGGAAACTACACAGTGAGGGACTGCAGCACCGGCCGCACCGTGAGCaccgtctctgtgtctgtggagGcTCACAGAGACTCCCTCACCCTGCGGTCTGGAGccgccctctccctccccctgttCACTGCAGAGCCAGTGGaggtgctgtttgctgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGCGAGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGACCCTGCGCTCACTCACAGCAGCTGACCAGGGAAACTACACAGTGAGGGACTGCAGCACCGGCCGCACCGTGAGCaccgtctctgtgtctgtgtctgtggcaGATCCCCCCCAGGACAGCACAGCTGCCATTGCTGTGTCGGTGTCCCTCGCCCTCGTGCTCCTGCTGGCTGGGGCTGCCGGGGTTGTGTGGTGGAAGTGGAGGGGATCTGGGGGGAGACGGACGGAGACACCTGGACACAATGACCCCTGCAGCCACGCTGACGCCCCAGAGCCGCAGAGTGTGGAGCTTCAACATggagagaaacacactgacacgGCACAGCCTCTACTCAACGGCCTCAACGCACAGCCCCAAGAGAACGGCCGCGGCCCCCATCCCCCAGCCCCCAGTCTCTGCTGCTTATGATTTTCACTCTTATTCTAATGCATTATTTCTTCTGCACTTTCATCTTGTACTATGAATGCTGCTGTCATTTACAGCTGTGGGCTATTACATTCTGATggttcagaaaaaaacaaatcgtCATGTATAAGCAATAGTGTCTCTAATGGTGCTGTGAGGCTCTCTGGTCACGGAGTGTCAAACTGCACTgtagaacaggaaaaaaatattcagagtACTCTTATTTTACTCGGTATGAAATAGTGTCCCTTTCCCACTTTGGCCCCAAACATCTTTGACAGGAGATTTACTGTAGCGTTGGGGCCTTTTtatagcagagagagagagggattggAGCCTGTCTGCCTCAACACCACTGTGCTTCCAGACCACTACTCTGTGCCTTATAGTGAATTTAAACTACATTTACATAGAAACATGGTCTATTGCAATATAAtgactttttcttttatgtgtatgttttttttctatatataggAACTGGCTTTTATATTGCCATTGAATTGTTGGAGAGAAATATCTAAAGTGTATttatactattttaaattatctgTAATGTATAAATTCTTGGTGTGATGTATCCTGtagtctgtgtttttcttctcagtgaATCACCTGCTCTCCTCATCCCCTGGTTCTGCAGCTGctcctctgtgtgtctgagcGATGCAGGACCCCCCCACTGCTCCCCCACCATTAATCTGTAtggccacacagacacactggagTCACACACTACAGCCGCACTGGTGTGATGCATTGCTGACACTCTGCAGCACCTCTGACAGTGTGGATATGTAGGTTTTTAGGGATTGCTTGACTCCTTGTCTAAAGATGTGAATAGaattacaataatgataatataaatcCCCACACATCAACGGATTATGTGAACCAGACGCCCTTATAAAACACTGCGGGCTGTGTCTGCTGGGTGTCTTGTAGCGGGTGTGACTCGCGGGCCCACACTTGTTAGGAGACAGACCCCCGCCCCCCCTGTGGATGAGACACGCAGCCTGGCTGGGAGGGGCGGAGCCAAGACGGC

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136289 lncRNA downstream 6569 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA downstream 6569 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA downstream 6569 2127793 ~ 2130255 (-) True G108938
TU136316 lncRNA downstream 79202 2052991 ~ 2057622 (-) True G108948
TU136170 lncRNA downstream 250548 1885965 ~ 1886276 (-) True G108834
TU136514 lncRNA upstream 206365 2346522 ~ 2390552 (-) True G109090
TU136517 lncRNA upstream 210597 2350754 ~ 2356238 (-) True G109091
TU136519 lncRNA upstream 210597 2350754 ~ 2356238 (-) False G109091
TU136520 lncRNA upstream 210597 2350754 ~ 2356238 (-) False G109091
TU136528 lncRNA upstream 254592 2394749 ~ 2397990 (-) True G109099
AMCG00006321 mRNA downstream 7886 2124372 ~ 2128938 (-) True AMCG00006321
AMCG00006322 mRNA downstream 33935 2099167 ~ 2102889 (-) True AMCG00006322
AMCG00006320 mRNA downstream 37675 2097573 ~ 2099149 (-) True AMCG00006320
AMCG00006316 mRNA downstream 102589 2027136 ~ 2034235 (-) True AMCG00006316
AMCG00006313 mRNA downstream 114959 2020894 ~ 2021865 (-) False AMCG00006313
AMCG00006325 mRNA upstream 66450 2206607 ~ 2208884 (-) True AMCG00006325
AMCG00006326 mRNA upstream 77874 2218031 ~ 2254916 (-) True AMCG00006326
AMCG00006329 mRNA upstream 137990 2278147 ~ 2300524 (-) True AMCG00006329
AMCG00006328 mRNA upstream 184348 2324505 ~ 2329809 (-) False AMCG00006328
AMCG00006331 mRNA upstream 263398 2403555 ~ 2413961 (-) True AMCG00006331
TU136304 other downstream 6569 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 112681 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 254987 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 411976 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 476820 1646480 ~ 1660004 (-) True G108784
TU136502 other upstream 183974 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 2024777 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3873947 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4645156 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4938232 7078389 ~ 7088985 (-) True G110195

Expression Profile