RNA id: AMCG00006326


Basic Information

Item Value
RNA id AMCG00006326
length 3900
RNA type mRNA
GC content 0.56
exon number 17
gene id AMCG00006326
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2218031 ~ 2254916 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTAATGTGAAGGATAATCATCGGCCCCTGCGTTTCCACACTGGGGTCTGTGCCTCTGCCCGCTGCTCTGAGCTGCTGGAGGGACTGGGGACTgagtccagagtccagagtccagagtccagagtccagtccagagtccagagtccagagcccagagcccagagcccagagtccagagtccagtccagagtccagagtccagtccagagcccagagcccagagtccagagtccagagtccagtccagagtccagagtccagaTGTCCGTGTCAGTGGGGCACTCTGCTTCTCTGCCCTGTGATGGAGCTGTAGCTGCTGGGATTCCTGAGGAGAAACTCTACATCCAGTGGAGTACGAAGGGTCAGCTCGTCTATGAGAGTCACAATGCATCAGTCTCTTTAGGGGAAGGCTTTGAGGGCAGAGTTGAGGTCCCCAGAGAGAAGGTCAGACGGGGGGACTTCTCTCTGACCATCCGCGGCACCCTGCTCTCTGATGAAGGCCTGTACGAGTGCTTTTATGAGGGAGGGGATGCAAGGTTGATTTTCCTGACACGTGTTGATCTCACTTTTACAGCTCACAGTGACTCCCTCACCCTGCGGTCTGGAGCCAATCTCACACTCCCCCTGTACACAGCTGAGCCAGTGGAGGTGCTGTTCTCTAGCCAAGGGTCCAACTcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGTGAGCCACCCTGACACCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTGTCTGACCCTGTGCTCACTCACAGCAACTGACCAGGGAAACTACACAGTGAGGGACTGCAGCACCGGCCGCACCGTCAGCAgcttctctgtCCAAGGGTCCAACTcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGTGAGCCGCCCTGACACCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTTCTCCCAGGCTTTTCCCATCTCAGTGTCAGTGCCCGTGGGGGACTCTGTCTTTCTGCCCTGTTATGGAGCTGTTGCTGTTCGGATGCGTGAAGAGCAGCTGCACGTCCTGTGGAAAACTCAGAGATACACATTGATATATTCACAACATGGAAGTACCTACATCAGCCCAGGCCTCAAGGGCAGAGCTGAGATCCCCAGGGAGAGGGTTACACAGGGGGACTTCTCTCTGACCATTCGCAACGTCAGCTTCTCTGATGAAGGCCAGTACGAGTGCTCTTGCAAGGCTCATAGTGACTCTCACACCCTGCGGTCTGGAGCTGccctctccttcctcctgtTCGCTGCAGAGCCAGTGGaggtgctgtttgctgctgcaggagatggagcctctgtctcagtgtgcgCTGTGGAGAGGGGTGCAGCAATCCGCCTTGGCCCCGGGTACGAGCACAGAGTGTCAGTGTGGGCTGGCTCTCTGAACctgcactcactcactccaGCTGATCAGGGCCAGTACACAGTGAGGGACTGCAGGACCAACCAGACCATCAGCACCATCTCTGTCACTCTCATAGTGACTCTCACACCCTACAGTCTGGAgccgctctctccctccccctgttCACTGCAGAGCCAGTGGaggtgctgtttgctgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGCGACGCAGCGAGCCGCCCTGGCCCCGGTGCACAGTGAGACCCTCACCCTGCCGTCTGGAGccgccctctccctccccctgttCACTGCAGAGCCAGTGGaggtgctgtttgctgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGCGAGCCGCCCTGGCCCTGGGTACGAGCACAGAGTGTCAGTGTGGGCCGACTCTCTGACACTACGCTCACTCACAGCAGCTGACCAGGGCCAGTACACAGTGAGGGACTCAAGGACCAATCACACCATCAGCACCGTCTCTGTCACTGTGAGAGTCCCAGTGTCCGTGTCAGTGGGggactctgtctctctgccctgTGATGGAGCTGCAACTGCTGGGATCCCTGAGGAGGAACTCCACATCCTGTGGAGAACACTGGACGAAACGGTGATGGAATCAAGCCATGGACATGCCAACCCCGGCCGACGCTTCAAGGGCAGAGCCGAGGTCTCCAGGGAGAGGGTCAGAAAGGGAGATTTCTCTCTGACCATTCACAACGTCGCCTCCTCCGATGACGACACCTACTGGTGTTTTTACAAGAATGGAGACGAGCTGGTGTTTCTTGTATATTATCGTCTCATTGTTACAGGTGTTATTGGAGGGGCAGGAGCTGAAGATCCGCAGAGTGACTCTCAGAGATCAGGGCACCTACACTGTGAGGGATGGCCAGGGCAACACCATCAGCACCGCCAGGCCCGTGAAGAACACCTGACTCTGAGGACCAGAGACGCCTTCTCTCTCCCACTGTACGGCGGAGACGCAGTGATGGTGCTGTTCCAGAGAGCTGGTCAGCTTCCCACAATCATCCGAAACACAGGCTCTCGTGGCCCCGTGTACGACTGGAGATTCACAGTGCAGGACGACACTCTGATGCTGGACAGGGTCACTGCAGATCATGAGGGCCAGTACACTCTGCAGGACGACCAGGGAAACACCATCAGCATCGTCACCCTCACTTCTCCTCGGATCTTGTCCCGGTGTTTGGGAAATGTGGTGACTCTGTGTCTCTGCCCTGTGATGGAACAGCTGCTGCTGGGATCTGAGGAGAAAATCTACATCCAGTGGAGCACATACAGACAGATTGTGTGGGAGTTCAGCAATGGATTAGTGTTTCCAGGCCAAGACTTCGAGGGCAGAGCTGAGGTGCCACTAGAGAACATCAGACAAAGGAACTTCTCTCTGACCATTCACAACATCTCCTTCTCTGATGTAAACCTGTACAAGTGTTCATATGAGGTTAGGAATGGGTTCTTGAATTTCCTGGGAAACGTTCATCTCACTGTTACAGGTCACGAGGACTCGGTCAGTGTGCTGTACGGAGACACCCTGAGCGTTcctctgcacacacagcaggacGTGCAGGTGCTGTTCAGCCCAGGAGGAGGTATGTCTCGTGAGCTGTGCCGGGTGGACAGAGGCAAGGTCACCGCAGGACTGGACCGGGGGCAACAGGTGTCTCTGGAGGGGCAGGAGCTGTGGATCCCCAGAGTGACTCTTGGAGATCAGGGCACCTACACTGTGAGGGACGGCCAGGGCAACACCATCAGCACCGCCAGGGTCACTGTGGCAGCCCGTGAAGAACACCTGACTCTGAGGACCGGAGACGCCTTCTCTCTCCCACTGTATGGCGGAGACACAGTGATGCTGCTGTTCCAGAGAGCTGGTCAGCTTCCCACAATCATCCGAAACACAGGGTCCCCTGGCCCTGTGTATATCCACCAATTCAGACTGCAGGACGACACTCTGACACTGGACGTGGTCACTTCAGATCATGAGGTCCAGTACACTCTGAAGGACAGCCAGGGAAACACCATCAGCATCGTCACCCTCACTGTGAGCGGAGCTACTTTGTCAGTGAATATTGCGAGAATAGTATTGCTAATAGCAGGATGTATCCCTCCCTGTTTACTGTTGGGCGGCttcatgtatatgtattgtaattgtaaaagcAGCAAGGAAAGGCAAAATGAAAATGGTCACGAATTGAAGACACCACAGAAGAAGACAAAGTCCAGCAGCAGGAAGATGCCCAGCAAACATTCAGACCCCACAGAGATGTCTCAGAGATCCCATAAATCTCAGCGGCCCAAACTCTGCTCTGCTGACCAGCGCCTGGGAGGCAGGAGTGAAGAAGAGGAGGCACAGCAGGAGGAAGTGAAGGAAGTCTGCACTGCAGCACTGAACACTTTCATTCTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136289 lncRNA downstream 87776 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA downstream 87776 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA downstream 87776 2127793 ~ 2130255 (-) True G108938
TU136316 lncRNA downstream 160409 2052991 ~ 2057622 (-) True G108948
TU136170 lncRNA downstream 331755 1885965 ~ 1886276 (-) True G108834
TU136514 lncRNA upstream 91606 2346522 ~ 2390552 (-) True G109090
TU136517 lncRNA upstream 95838 2350754 ~ 2356238 (-) True G109091
TU136519 lncRNA upstream 95838 2350754 ~ 2356238 (-) False G109091
TU136520 lncRNA upstream 95838 2350754 ~ 2356238 (-) False G109091
TU136528 lncRNA upstream 139833 2394749 ~ 2397990 (-) True G109099
AMCG00006325 mRNA downstream 9147 2206607 ~ 2208884 (-) True AMCG00006325
AMCG00006319 mRNA downstream 77874 2136824 ~ 2140157 (-) True AMCG00006319
AMCG00006321 mRNA downstream 89093 2124372 ~ 2128938 (-) True AMCG00006321
AMCG00006322 mRNA downstream 115142 2099167 ~ 2102889 (-) True AMCG00006322
AMCG00006320 mRNA downstream 118882 2097573 ~ 2099149 (-) True AMCG00006320
AMCG00006329 mRNA upstream 23231 2278147 ~ 2300524 (-) True AMCG00006329
AMCG00006328 mRNA upstream 69589 2324505 ~ 2329809 (-) False AMCG00006328
AMCG00006331 mRNA upstream 148639 2403555 ~ 2413961 (-) True AMCG00006331
AMCG00006332 mRNA upstream 285354 2540270 ~ 2550180 (-) True AMCG00006332
AMCG00006333 mRNA upstream 303959 2558875 ~ 2561435 (-) True AMCG00006333
TU136304 other downstream 87776 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 193888 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 336194 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 493183 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 558027 1646480 ~ 1660004 (-) True G108784
TU136502 other upstream 69215 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 1910018 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3759188 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4530397 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4823473 7078389 ~ 7088985 (-) True G110195

Expression Profile