RNA id: AMCG00006327


Basic Information

Item Value
RNA id AMCG00006327
length 306
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00006327
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2366292 ~ 2371085 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCACGTTATGACAGTTTGGTGGACTGGGAGTCTTACAAGGCCCAATTCCAGCTGGTAGCATGGGCTGGACAATGGACCCCAGAAGAGATGGCTGGACAGCTAGCCATGGCCTTAGATGGCAAAGCTCAACAGGCCCTCCTGGATTGCTGCTCCAGTcatgtgctgctgctgtgttttcagatCAAGAGTGAATGGCTCAAGCTCGGTCTGCCGGAGGACACCACACTGCGCTGGAGAGAGCAGCCGGACAGGCAGGTTTTCCACcaggaggaaggaggagagacACTGGAGCCCCAGTGCTAA

Function

GO:

id name namespace
GO:0004112 cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136392 lncRNA upstream 10054 2350754 ~ 2356238 (+) True G109004
TU136373 lncRNA upstream 73396 2292697 ~ 2292896 (+) True G108987
TU136236 lncRNA upstream 76837 2250567 ~ 2289455 (+) True G108889
TU136264 lncRNA upstream 103795 2259942 ~ 2262497 (+) True G108914
TU136237 lncRNA upstream 113946 2159977 ~ 2252346 (+) True G108890
TU136402 lncRNA downstream 31818 2402903 ~ 2403151 (+) True G109010
TU136404 lncRNA downstream 64973 2436058 ~ 2452829 (+) True G109011
TU136405 lncRNA downstream 64973 2436058 ~ 2518534 (+) False G109011
TU136687 lncRNA downstream 633771 3004856 ~ 3028646 (+) True G109217
TU136688 lncRNA downstream 645694 3016779 ~ 3069228 (+) False G109218
AMCG00006323 mRNA upstream 160321 2204897 ~ 2205971 (+) True AMCG00006323
AMCG00006324 mRNA upstream 173407 2191525 ~ 2192885 (+) True AMCG00006324
AMCG00006318 mRNA upstream 194918 2154397 ~ 2171374 (+) True AMCG00006318
AMCG00006317 mRNA upstream 228591 2134356 ~ 2137701 (+) True AMCG00006317
AMCG00006310 mRNA upstream 277290 2080532 ~ 2089002 (+) True AMCG00006310
AMCG00006330 mRNA downstream 20634 2391719 ~ 2396364 (+) True AMCG00006330
AMCG00006334 mRNA downstream 157146 2528231 ~ 2539840 (+) True AMCG00006334
AMCG00006337 mRNA downstream 218299 2589384 ~ 2594077 (+) True AMCG00006337
AMCG00006338 mRNA downstream 228169 2599254 ~ 2605484 (+) True AMCG00006338
AMCG00006335 mRNA downstream 242007 2613092 ~ 2625633 (+) True AMCG00006335
TU135896 other upstream 553617 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 627025 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 936305 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1080240 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1375470 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 990269 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 1132096 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1198954 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1228156 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1266658 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile