RNA id: TU136502


Basic Information

Item Value
RNA id TU136502
length 2176
RNA type TUCP
GC content 0.47
exon number 5
gene id AMCG00006328
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2324131 ~ 2329991 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttaaattaaattgtgacaaAGTCGTGACGAATCCTCACTCCTCCCACAGCCAGCGAACGACGGACACACGAGGCGCGTTTCTCAAGCCGGAGTCATCCGGGCGTCCGCGGCGTGCAAACCGGCTTTCATCCGTTTTACTTTTTACACGTATGATCGCCTGCTTGTTTCGTGTGTAGAGCACATGAATGCACTGCTAAACGagcacagcagctgcagggagaAGAGCAACAAAAATGGCAGCATCTCTCCGCTTTTCTGGGATAAAGGCCCGTGTGTGCCGGGGGCCGAGCCGGCGCTGCGCTCTCCTGTCCGGCCACAGGAAGGGAGCCCGGCCCGGGGGGCAGGTTTCGTCAGATCTGTGGTTACTTTGACTTTTTCTCGAAGTGTGAGTTTCGATTTGAGTAACGTCCCTGGATAAGACCCTGGTTAcgaataaattaaatactaacGGTGTCCTCGGACTAAACTGTTGCTGAGCGCAAACAAGTCTGGCAGCAGGATGGGCTGGGCAGTTCTGTGCCTGATGTTTTGCCTGGCCTCTATATCATCTACGACAGTGCCTTATGGGGAGGACTTCAAAATCCCTCTGCCCGCCGATGCTTCTGATGTGGAGTTCAGACACTCCTCAGAccacagtgtcagtgtggtcTTCAGAATCAACAAGGGGACTCTCTCCTCCACCCCCCCGGGGTACCAGGGCCGAGTGTCGGTGCAGGGGGGCTTTCTGGTGGTGAAGGCGGTGACTCCCGGAGATGAGGGGAACTACACTGTGTGAGATAAAGAGCAGAATGTCTACATCGTGCTAAATCTGTGTGGTACAGAATACAGCAAATCTACAAACCTGTCTCTTGCAGacaatctgacccttcctctcCACTCCAGCGCTTCAGTAGaggtgctgtttgctgctgcaggagagggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGTGAGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTTTCTGACCCTACACTCACTCGCAGCGGCTGACCAGGGAAACTACACAGTGAGGGACTCGGGGACCAACAGGACTGTGTGTGTCGTCACTGTGAGACTGCGGGCAAATAACACAACACCAAgtcCTCGGAGTTCAGCACAGGGAGGTGGAAATCTTGACCATCTCGGACTCTATATCGCCCTTCTTTTATTTGCTGTTGTCGTCCTCTGCCTTGTCATTCATGCATTGTGTCAGAGAGATGGTGGGAGGCAGAGGAGCAAGAACAGGGCCCTTGATTTGTAGGGTGCCCGTGTGTGTATCCCGTTTTGGTCTGAATCtgacccttttttttttgtttaacaagaaaataaaattgaaataatgcaaCTCGTTCTCTGTTCACAGACTGTGCTGTGAGGCGAGTCCAGGCTGCCCTGCTTCTAAGGAAGGATAATCACACCTGCAGGGATCATAGGAGAtcctgcattgttttgttttggggggatgAGCATTAATACTACAGCGGTTTTTAGAGTGATTAATCCTGAGCAGTTCTACACTGATTGTGTTCTTCATAAGGCACTCAAAATGGGGATGAGACCACACTGACTTCCCTGTTGTGTGTTCAGAGCGGCCAATTCCAGAGTTCTGTCTCTGCGGTGAAGGGAAGGATGCGATCCAGGCTGTTTTGAATGTTTGTCGGCAGtacggttttgtttttctgtttgtttgtttttctttccccacaTATTGTGCTCAAGAGAATATTATAATCctacattcacattttcatatctGATGGCATCTGATACATTCATATTAGGGGTGCAGTGGTATTGCGATTAGTTTTCCTATCGGCACCCGATAAAGGGAGTAACTGCATTATCGGCTatcagattttttaatttattttttggtcatGGTAGCTAATACGGTTTACTGacaaggatttgttttgttgttgttgaagctAAAGTGTACTGTGCTTTATTAGAATCTCTTCATATCAAAAAGCTAAATTCTAGTagttattatatacatttcaacttttaaaaaaaaaactcttagaTCTAAATGTTCTAAACAACTCTTTATGCGGTTTCATCTtttttgtactttctttttaaattctataTTGGAAGTAGACTGGattgtatatttattctatCATCTTCCTATtcaatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136289 lncRNA downstream 193876 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA downstream 193876 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA downstream 193876 2127793 ~ 2130255 (-) True G108938
TU136316 lncRNA downstream 266509 2052991 ~ 2057622 (-) True G108948
TU136170 lncRNA downstream 437855 1885965 ~ 1886276 (-) True G108834
TU136514 lncRNA upstream 16531 2346522 ~ 2390552 (-) True G109090
TU136517 lncRNA upstream 20763 2350754 ~ 2356238 (-) True G109091
TU136519 lncRNA upstream 20763 2350754 ~ 2356238 (-) False G109091
TU136520 lncRNA upstream 20763 2350754 ~ 2356238 (-) False G109091
TU136528 lncRNA upstream 64758 2394749 ~ 2397990 (-) True G109099
AMCG00006329 mRNA downstream 23607 2278147 ~ 2300524 (-) True AMCG00006329
AMCG00006326 mRNA downstream 69215 2218031 ~ 2254916 (-) True AMCG00006326
AMCG00006325 mRNA downstream 115247 2206607 ~ 2208884 (-) True AMCG00006325
AMCG00006319 mRNA downstream 183974 2136824 ~ 2140157 (-) True AMCG00006319
AMCG00006321 mRNA downstream 195193 2124372 ~ 2128938 (-) True AMCG00006321
AMCG00006331 mRNA upstream 73564 2403555 ~ 2413961 (-) True AMCG00006331
AMCG00006332 mRNA upstream 210279 2540270 ~ 2550180 (-) True AMCG00006332
AMCG00006333 mRNA upstream 228884 2558875 ~ 2561435 (-) True AMCG00006333
AMCG00006340 mRNA upstream 245670 2575661 ~ 2579656 (-) True AMCG00006340
AMCG00006344 mRNA upstream 251346 2581337 ~ 2586846 (-) False AMCG00006344
TU136304 other downstream 193876 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 299988 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 442294 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 599283 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 664127 1646480 ~ 1660004 (-) True G108784
TU137277 other upstream 1834943 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3684113 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4455322 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4748398 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 6392397 8722388 ~ 8724352 (-) True G110507

Expression Profile