RNA id: AMCG00006329


Basic Information

Item Value
RNA id AMCG00006329
length 765
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00006329
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2278147 ~ 2300524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCTGCGCGTCGCAGCGCATGGAAATAGTTCTCAGGTTGACTGTGTGTCCTTCACCGCTGCCACCAGGCAGACAGCGGTGTGGCCCGGGGACACGGCCAGCCTGCCCTGCAGCCTGCGCTTCCAGCACGAAACCATGTGGTTCGTGCAGCGCGGCGAGGCCCTGTCTCTGGTCATTTTGGCGAATAAGAAACCACATGTACAGCTGGGCGATCATTTCAAATACGTCAAAAGGGCTGAGGGTCGCTTCTCTCTGGTGCTGAACTCCTCCAGCCACTCTGTCAACCTGAGGATCGAGAACGTCAGCCTCGCCGACCTGGGGCTGTACTACTGCTGCGAGAGGACGCAGGGGGTCATCGAAGTGGGCACGGGTATCAGACTGGTCTCTACggTGGCAGACACAGAAGAAGAAAACGATGAGCATCAAAGCACACTGAAGAGCTTTTACATTGACCTGCCCAGCCTGGTCATACTGGTCTCTGTTCCTCTGCTCGCTACCTTGCTCTCCTCCTTGTGTGTCTTCTGCTTCTTCCCCAGAGCAGAGAACAGAGAAGTAATGAAGCTGCATTTCCTGGGGAAACGTGGTGTGAACCCCAACGCACCTGCAGTGAGAGAGACACTCTTAGAGCAGatCAAGAGCGAATGGATCAGGCTGGGTCTGCCGGAGGACACCACACTGCGCTGGAGAGAGCAGGCGGAGGGGCAGGTTTTCCAccaggaggagggaggaggagagacacTGGAGCCCCATAATGCAGTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136289 lncRNA downstream 147892 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA downstream 147892 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA downstream 147892 2127793 ~ 2130255 (-) True G108938
TU136316 lncRNA downstream 220525 2052991 ~ 2057622 (-) True G108948
TU136170 lncRNA downstream 391871 1885965 ~ 1886276 (-) True G108834
TU136514 lncRNA upstream 45998 2346522 ~ 2390552 (-) True G109090
TU136517 lncRNA upstream 50230 2350754 ~ 2356238 (-) True G109091
TU136519 lncRNA upstream 50230 2350754 ~ 2356238 (-) False G109091
TU136520 lncRNA upstream 50230 2350754 ~ 2356238 (-) False G109091
TU136528 lncRNA upstream 94225 2394749 ~ 2397990 (-) True G109099
AMCG00006326 mRNA downstream 23231 2218031 ~ 2254916 (-) True AMCG00006326
AMCG00006325 mRNA downstream 69263 2206607 ~ 2208884 (-) True AMCG00006325
AMCG00006319 mRNA downstream 137990 2136824 ~ 2140157 (-) True AMCG00006319
AMCG00006321 mRNA downstream 149209 2124372 ~ 2128938 (-) True AMCG00006321
AMCG00006322 mRNA downstream 175258 2099167 ~ 2102889 (-) True AMCG00006322
AMCG00006328 mRNA upstream 23981 2324505 ~ 2329809 (-) False AMCG00006328
AMCG00006331 mRNA upstream 103031 2403555 ~ 2413961 (-) True AMCG00006331
AMCG00006332 mRNA upstream 239746 2540270 ~ 2550180 (-) True AMCG00006332
AMCG00006333 mRNA upstream 258351 2558875 ~ 2561435 (-) True AMCG00006333
AMCG00006340 mRNA upstream 275137 2575661 ~ 2579656 (-) True AMCG00006340
TU136304 other downstream 147892 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 254004 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 396310 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 553299 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 618143 1646480 ~ 1660004 (-) True G108784
TU136502 other upstream 23607 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 1864410 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3713580 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4484789 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4777865 7078389 ~ 7088985 (-) True G110195

Expression Profile