RNA id: AMCG00006332


Basic Information

Item Value
RNA id AMCG00006332
length 2752
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00006332
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2540270 ~ 2550180 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTCCGTTCTAATCGGAGCTTCCGCCCAAACACGGAACATCCGCAGCACAATACGCTCGCACTCGCTCTGGTACCTCTTCACACTGACCACGGGACAGACTGACCTCCCAGAGCTGGTTGTGGTGCAGATGGTGGATGACGTGCAGATGGAGTACTATGACAGTACGGTGAAGAAGCCGCTCTCTCGCCGGCACTGGGCCCCTGACTCGGATACGGTGGAATATGCCGAAAGAAAGGTTGATGGATGTATGCGAACTTACTACAGCATGAAAGAAAAACTGCAGAGAATCATGCCGCGCTTCAACCACAGCGGAGGTCTTCACACCTACCAGAGGATAGCTGGCTGTGAGCTGGATGATGACGGCACAGTGCGCTTTAAGGCAGTGGATGCCTATGATGGCCAGGAGGTGATGAGCTACGACCCGCAGGCCTACAGGTGGAACACCCTTGTGCCCGACAGCCTGATAGACCAACTGATGCTCAAAGTCAATAGAGCTATAGATGAAAACATCTACCAGCCCTGGTGTGTGAGAATACTGAAGAGCCACCTTCAGCAGGAAAATCATATAGTCAACAGGAGAGTGAAGCCCAGAGTCAGGGTGTTCTCCAAGGGGGCGGAGGTGGTCTGCCTGGCGACCGGCTTCTACCCACGGGCTGTGGAGGTGACCCTGTTGAGAGACGGCCAGCCCGTCCCAGAGCAGCAGCTAAGAGGGGGGGAGGTGCTGCCCAACGGAGATGGGACCTACCAGCTGAGGAGGAGCCTGACTGTCAGCACACAGGAGCAGAGAGAGCACCAGTACTCCTGCACGGTCACTCACAGCAGCATGGACAACAAGCTGGACATGGACTGGGATCCGCAGCCTGAGCAGGGCACTGGGCTCCTTGCTGGCGCAGTGATGGGGGCTCTGCTGGTCTTGctgatcatcatcatcattggaATCTTGAtctggaggaggaagaggaaagcAGCAGgggctggactggactgcaggaCTGGTGCTGCTGTGAAGTACAGCGCTGCCCACAGATCAGACGGAAAGAGCAGCAGGTCTTCAATCAGCTCTGTGTCTGAATCAACCACTACACACTGACAGAGGACTGCAACATGGatagagctgtgtgtgtgtAAGCAGATGGTGAGAGCAGCGTGTCTTCAAACAGCTCTGTTTCTGATGGAGGACTGCAACATGGCTagatctgtgtctgtgtgtttgtgtgtgtctgtgtgtgtaaatgttgcATGATGGATATCTGATGGAATAATACAGGAATTAAAACTGTAAGGTTCTAATCAATTAGAAACAGGGTTTAATGGGGACAAATTATACACAGCTGTGACATGTGCTCTTCTGTCAACAGGATGCATTGCATTCCCtgacatattgaaaaatatctaCATAGTCTTCCTGCTGCCGGTGGAGCAGCGGCCATGTCGGGCCCTATCTAAGTACAATTCATCTAGGCACGCTATATACTCCAAATCCTTCTTAAAACTCTCCCAGTTTCACTCATCTCTCTCCCGCGGCGGACTGCAGGCCGTCTTGTTTAGACTCTCCCGCCCAGCGCCCTCTATGATGTTGTTGAACACGGCTGCCATCTTACGCCTCGTCTCGTTTTTCCACGGTGTCGCCTTGTTAACTTTTCTCTCGCAATGTCTCAGCTCCTCCAGTGCTGCCCTCACACTCTGTCCTTCCCTATCGTGTTTGGGCATCGCTCTGAAGCGCTCTGTTGTCTGCCTCATCTTGAGACCAGCCATGTAGGTTGCATGCCACCCCACGTCTCTGACACCATTGTAGCGAACAGGggtctcttttatttatttttaaatgacggACAGCAGACAGTTCAGAGCAACATTGGGAGTTTATTGCCCTTATTAACACAGAGCTAGAGATCTATTTTGGCTGGGACCCACgccaaaacaataacaaataaccCTGTGCTCTATTAACACTcgctcactcacacacagctctcACTCACTCTTGCTGCTCCTCGCCAACTCACTCCTCAGTCCTGATCCCCTCCTCTCAATTCCACGCCAGACACACCCCCCAGCACACACTCTCCTATCACTACGCTCAAACAGTCTACCTGTCAACCCAGCCTGCCAGGTCACTACAAAAACTTTAATCACTGAATGCACTTTAAGTATATtagttacatttctgaaaaacttAAACAGTATCCCTCCTTAATTGACCAATAAGCTACCGTATTTAGCATTCAGCTTTATAATATGCACAACTCTATGTTATTTTTcgaaatttaaatattttgtattatgtttgaCAGACATATTAACTTTTTATAATCATATGATAAATtaacaacaaattaatacaaagaaaCGTCAGGACGGCTTTGATGGTGATGGCTCATCTCCCGCCCATCAGTGAGATTTGTTTGTAATCCTCAAAAATGTTGGTGTTCAGATAGATCTGAATAGAAAATTGCTTCTGGTCCTTCTTGGTTTTGAGGCCTGCATTCAGATCATGTCACGTATCATTCTGCCATCTTTTATAGATAATGATTTTCACCCGGCAGTCTGCAATATTATACCCACAAGGCTGATCAAAGACTGACCGCAGTCCCTTCAGCTAAACCCCATTTAACAATCTCCTAAGTACTTTCAATGTCtctttgtatgtgtatgtattaatttatatcatTTGTACATGTAATGTAATTCTACATACGTATTGGTCTCACAGTgaagttttaataataaacagcagattaattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136528 lncRNA downstream 142280 2394749 ~ 2397990 (-) True G109099
TU136514 lncRNA downstream 149718 2346522 ~ 2390552 (-) True G109090
TU136566 lncRNA upstream 32439 2582619 ~ 2585989 (-) True AMCG00006344
TU136621 lncRNA upstream 268289 2818469 ~ 2832329 (-) True G109163
TU136636 lncRNA upstream 338306 2888486 ~ 2891893 (-) False AMCG00006354
TU136638 lncRNA upstream 342714 2892894 ~ 2894534 (-) False AMCG00006354
TU136816 lncRNA upstream 736090 3286270 ~ 3287229 (-) True G109294
AMCG00006331 mRNA downstream 126309 2403555 ~ 2413961 (-) True AMCG00006331
AMCG00006328 mRNA downstream 210461 2324505 ~ 2329809 (-) False AMCG00006328
AMCG00006329 mRNA downstream 239746 2278147 ~ 2300524 (-) True AMCG00006329
AMCG00006326 mRNA downstream 285354 2218031 ~ 2254916 (-) True AMCG00006326
AMCG00006325 mRNA downstream 331386 2206607 ~ 2208884 (-) True AMCG00006325
AMCG00006333 mRNA upstream 8695 2558875 ~ 2561435 (-) True AMCG00006333
AMCG00006340 mRNA upstream 25481 2575661 ~ 2579656 (-) True AMCG00006340
AMCG00006344 mRNA upstream 31157 2581337 ~ 2586846 (-) False AMCG00006344
AMCG00006342 mRNA upstream 56042 2606222 ~ 2609426 (-) True AMCG00006342
AMCG00006343 mRNA upstream 78315 2628495 ~ 2631707 (-) True AMCG00006343
TU136502 other downstream 210279 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 410015 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 516127 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 658433 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 815422 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 1614754 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3463924 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4235133 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4528209 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 6172208 8722388 ~ 8724352 (-) True G110507

Expression Profile