RNA id: AMCG00006334


Basic Information

Item Value
RNA id AMCG00006334
length 411
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00006334
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2528231 ~ 2539840 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTAAAATTGGCCGGCGCAGGGAGCACCCCTGGGGCGGTGACGCGGCGGGAGGTCCAGCCCGGGGACTCCATGACTCTGCCCTGCGACGTGTCCTATGAGTTTGAGACTATGTGGTTCTGCCAGTGGCCGGGAGAGACTCCAACACTAGTTGTCACCGTCAAGACCGGGATCTCTGGTACCGAACTACTGCCGTTCACCTTCCCAGAATCTGGCTTCAAGAGCCGCTTCCAGCCAGTGTTGAACTACAGTAGTGGCGCCATATCCCTAAGGATTGACAACATCACGGCGGGGGATCTGGCGCTATATTTCTGTGCCGACCGGTACTCCGGTGGGATGAAGTTCGGGACTGGAACCAGACTGGTGTTCGCAGGAATGAAGTCCTTTCAAAAGGATCCAACCCTGGACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136405 lncRNA upstream 9697 2436058 ~ 2518534 (+) False G109011
TU136404 lncRNA upstream 75402 2436058 ~ 2452829 (+) True G109011
TU136402 lncRNA upstream 125080 2402903 ~ 2403151 (+) True G109010
TU136392 lncRNA upstream 171993 2350754 ~ 2356238 (+) True G109004
TU136373 lncRNA upstream 235335 2292697 ~ 2292896 (+) True G108987
TU136687 lncRNA downstream 465016 3004856 ~ 3028646 (+) True G109217
TU136688 lncRNA downstream 476939 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA downstream 526522 3066362 ~ 3069228 (+) True G109218
TU136755 lncRNA downstream 695065 3234905 ~ 3236401 (+) True G109260
TU136762 lncRNA downstream 708029 3247869 ~ 3252080 (+) False AMCG00006366
AMCG00006330 mRNA upstream 131867 2391719 ~ 2396364 (+) True AMCG00006330
AMCG00006327 mRNA upstream 157146 2366292 ~ 2371085 (+) True AMCG00006327
AMCG00006323 mRNA upstream 322260 2204897 ~ 2205971 (+) True AMCG00006323
AMCG00006324 mRNA upstream 335346 2191525 ~ 2192885 (+) True AMCG00006324
AMCG00006318 mRNA upstream 356857 2154397 ~ 2171374 (+) True AMCG00006318
AMCG00006337 mRNA downstream 49544 2589384 ~ 2594077 (+) True AMCG00006337
AMCG00006338 mRNA downstream 59414 2599254 ~ 2605484 (+) True AMCG00006338
AMCG00006335 mRNA downstream 73252 2613092 ~ 2625633 (+) True AMCG00006335
AMCG00006336 mRNA downstream 101572 2641412 ~ 2649109 (+) True AMCG00006336
AMCG00006339 mRNA downstream 124973 2664813 ~ 2668215 (+) True AMCG00006339
TU135896 other upstream 715556 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 788964 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1098244 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1242179 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1537409 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 821514 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 963341 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 1030199 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1059401 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1097903 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile