RNA id: AMCG00006337



Basic Information


Item Value
RNA id AMCG00006337
length 1220
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00006337
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2589384 ~ 2594077 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCAATCACTCGCTGTCTATCTTGTACACACTTATGATGGGACACACACACTTCCCCGAATACGTGGTAGTGATGAAGGTGGATGACGTTGTGATGGAGTACTACGACAGCACGCTGAACAAGATGGTCTCTCACTGGCACAGAGGTGCAGCCCCCGACACCCTTGAGTTCATTGAAGACAAGATCACCCTCATTCTAAACTTTCAGTATGGAATGAAATCACGTATACAACAGCACATGTTGCACTTTAATAACAGTGGAGggctTCACACCTACCAGAGACTGGCTGGTTGTGAACTGGATGATGATCAAAAAGAGCAGTTCTGGGATGCAACTGCCTACAATGGGATGGAGGTGCTGCGCCTTGATCAGAAGACTTTAATATGCAATGCAGTTAATCCTAATGGATGGACTAACATGAAGTCAGTGGAGTTCAATAAAGTGCTATATAGTGAAATATACAAGCCCACATGTATGAAAGTATTGAAGACATTCCTTCAGCAAGATGAAAATGTTAAGATTTGGAGAGAGAAGCCCAGAGTCAGGGTGTTCTCCAGGGGTGGCAGGGGTGGCAGGGGCTCCAGGGGGGCGGAGGTGGTCTGTCTGGCAACTGGCTTCTACCCCCGGGCTGTTGAGGTGACCCTGCTGAGAGACGGCCAGCCCATCCCAGAGCAGCAGCTGAGCGGGGGAACGGTGCTGCCCAACGGAGACGGGACCTACCAGCTGAGGAGGAGCCTGACTGTCAGCATACAGGAGCAGAGAGAGCACCAGTACTCCTGCACGGTCTCTCACAGCAGCATGGACAACAAGCTGCACATGGACTGGGAGTTGCAGCCTGAGCTGGACGCTGGGCTCCTCGCTGGCACTGTGATGGGGGCTCTGCTGGCCTTACtgatcatcatcatcgtcatcttCATCTggagaaggaagaggaaaaTGGCAGggCCCGGACTGGACTGCGGGACTGGTGCTGCTGTGAAGTACAGTCCTGCCCACAGTGAGTACCAGTGTACTGTACACAGTGTCTGTGACTGGCCCCAGGGCCACAGTGACTACCAGTGTCAGTCACCTTTCCAGGAGCCACCACTTCAAAGCTGCCCCTCTgacctctgtgtctctgtcttacaggaggagcagagagggagggagagggacaaaGCAAcacatcttcatcttcatcttgaGACAGCTCCTCAACACCATCTTAAACAGGAACTCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU136405 lncRNA upstream 70850 2436058 ~ 2518534 (+) False G109011
TU136404 lncRNA upstream 136555 2436058 ~ 2452829 (+) True G109011
TU136402 lncRNA upstream 186233 2402903 ~ 2403151 (+) True G109010
TU136392 lncRNA upstream 233146 2350754 ~ 2356238 (+) True G109004
TU136373 lncRNA upstream 296488 2292697 ~ 2292896 (+) True G108987
TU136687 lncRNA downstream 410779 3004856 ~ 3028646 (+) True G109217
TU136688 lncRNA downstream 422702 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA downstream 472285 3066362 ~ 3069228 (+) True G109218
TU136755 lncRNA downstream 640828 3234905 ~ 3236401 (+) True G109260
TU136762 lncRNA downstream 653792 3247869 ~ 3252080 (+) False AMCG00006366
AMCG00006334 mRNA upstream 49544 2528231 ~ 2539840 (+) True AMCG00006334
AMCG00006330 mRNA upstream 193020 2391719 ~ 2396364 (+) True AMCG00006330
AMCG00006327 mRNA upstream 218299 2366292 ~ 2371085 (+) True AMCG00006327
AMCG00006323 mRNA upstream 383413 2204897 ~ 2205971 (+) True AMCG00006323
AMCG00006324 mRNA upstream 396499 2191525 ~ 2192885 (+) True AMCG00006324
AMCG00006338 mRNA downstream 5177 2599254 ~ 2605484 (+) True AMCG00006338
AMCG00006335 mRNA downstream 19015 2613092 ~ 2625633 (+) True AMCG00006335
AMCG00006336 mRNA downstream 47335 2641412 ~ 2649109 (+) True AMCG00006336
AMCG00006339 mRNA downstream 70736 2664813 ~ 2668215 (+) True AMCG00006339
AMCG00006345 mRNA downstream 135960 2730037 ~ 2751105 (+) True AMCG00006345
TU135896 other upstream 776709 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 850117 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1159397 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1303332 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1598562 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 767277 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 909104 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 975962 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 1005164 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 1043666 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile