RNA id: AMCG00006339



Basic Information


Item Value
RNA id AMCG00006339
length 850
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00006339
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2664813 ~ 2668215 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gagagagagaaagagagaaggagaaagggagagagaaattgGAGGTTAATTCAGTGTCTGAAAACTACAGtatatcagagagagagagtgagagggtgtgagttttatttcagattttactATGATGCAAAACACAGTCATTGTAATTTGCACTTTGGTCAGCCTCTCTCACAGCATTGTTGCCCAGAGAGTCTACACCTCTGTCGGGGGCACAGCTCTCCTGCCCTGCAGGGACAGGAGGGCAGTGGAGAAGGCAGGCACTGTCCAGTGGGAGCACACTGCCGTGGAGGGAGTGCAGTCACGCAGAGTGCTGACCGAGGGCCGATTCACCCTGAAAGCACGCGCCGCACTGCAGATCAGCAACGTCCAGCTCTCAGACGCAGGGATCTACTACTGCGGCCAGGGAGCAGGCAGCGACCTGCTGGTTCTGCAGGtgacctctgacccctctGACCCCCTTCCTGATGACTGGGTCATTGTGACATGTGACGTGAAGTGCCCTCGAGACTGTGGACACTACATCCTCAAGATGAACAGCACAAGACAGACCCAGCCCAGCGGAGCCCCTCCTCAGGACTTTTTCCAATTCCAAGAGACGGACCGCGGCAAGACATTCCGTTGCTGGCTGGAGGTCAATGGCCTCCCCCAAACGGACGTCTCCTTTGGGTTGGCCATCCAGAACCACACAGCTACTCTAAGCCAAGTCCAGTCCCTCCACTCTGGCTTGGACAACCTACAGGACAACCTCTTCGATGTGAGGAAATCTCTAGTTTCTCAGAGCGTCTCTTCTGCACGTCTGCTGTGGGACCTCGCTGCTGTGGATGCTGCTTCTCGGCTTGGCCCGGCTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU136405 lncRNA upstream 146279 2436058 ~ 2518534 (+) False G109011
TU136404 lncRNA upstream 211984 2436058 ~ 2452829 (+) True G109011
TU136402 lncRNA upstream 261662 2402903 ~ 2403151 (+) True G109010
TU136392 lncRNA upstream 308575 2350754 ~ 2356238 (+) True G109004
TU136373 lncRNA upstream 371917 2292697 ~ 2292896 (+) True G108987
TU136687 lncRNA downstream 336641 3004856 ~ 3028646 (+) True G109217
TU136688 lncRNA downstream 348564 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA downstream 398147 3066362 ~ 3069228 (+) True G109218
TU136755 lncRNA downstream 566690 3234905 ~ 3236401 (+) True G109260
TU136762 lncRNA downstream 579654 3247869 ~ 3252080 (+) False AMCG00006366
AMCG00006336 mRNA upstream 15704 2641412 ~ 2649109 (+) True AMCG00006336
AMCG00006335 mRNA upstream 39180 2613092 ~ 2625633 (+) True AMCG00006335
AMCG00006338 mRNA upstream 59329 2599254 ~ 2605484 (+) True AMCG00006338
AMCG00006337 mRNA upstream 70736 2589384 ~ 2594077 (+) True AMCG00006337
AMCG00006334 mRNA upstream 124973 2528231 ~ 2539840 (+) True AMCG00006334
AMCG00006345 mRNA downstream 61822 2730037 ~ 2751105 (+) True AMCG00006345
AMCG00006349 mRNA downstream 127031 2795246 ~ 2801973 (+) True AMCG00006349
AMCG00006350 mRNA downstream 133855 2802070 ~ 2807457 (+) True AMCG00006350
AMCG00006351 mRNA downstream 141125 2809340 ~ 2811305 (+) True AMCG00006351
AMCG00006348 mRNA downstream 144116 2812331 ~ 2813489 (+) True AMCG00006348
TU135896 other upstream 852138 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 925546 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1234826 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1378761 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1673991 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 693139 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 834966 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 901824 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 931026 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 969528 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile