RNA id: AMCG00006340


Basic Information

Item Value
RNA id AMCG00006340
length 2472
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00006340
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2575661 ~ 2579656 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGGAGTGGGCCGAGTGTGGGGGTGGCTGGCACCCGCTTTCTCCTACCGCCCTTGGAGGGAGAAGCAGAGTGCGAAGGACAGCGATggagaggaggtggaggaatgggagatgaagaaaaaagaggaggaggagaggagcagGATGGAGCTGAAGCAGGGTGGTTGGAACTGGGGATGGGGTTGGGGATTGGGGGGCTGGTGGtggaggagaaagaaagaggtcCCAGGATGGGAGATGgacactgagagggagagagagttaaaggaggagggggaggacgCCATGGAGTGGAGGACAGTAGAACAAGTTGAGGCGGAAGAAGTGACCAAGAGCGCCCTGgagaggaggtggtggtggaaAGTTGTCCCCTCTCCCCCAGGCTGGCTGCGACTCTGGCCCAAGCAGGAGGTGACCAAATCGGGGAGCGCTGCAGGAAACGTGGAGGCTTCATTGGGGCCCACTCTGGCCTTCACGACCATGCCTCCTTCACccaccacctccacctccacctcctcctcgtCCTGGGCGCTGCTCCAGAGCCTGTACCAGACCTGGGAGGGCTGTGCGGTCCTGCCCCATCACTACGACATCTGCTTCAACTTCTTGCGCCACCTCTTCGATCTCTTCGTGGTGGGCTTCCTGTGGGCCACCTCCACCCCCGTCCGTGTGGTGCTGGACGTGCTGGGCGTGCAGGGCGCGGTGAAGCTGTGGCTCCATGGGATGGCGCTGTTCTTCGTGTCCTCCGCGGGAATGGCTGGCTTCCTGTGGCTCATCCAGGCCTACCTGCCCCAGTTCGCCCTGGTCTATGGCATCCTGCAGGGCCTGGTGATCTCTGTGAGCCTCAGGCAGAGCGTACTGCTGGGGGAGGCCGACGCAGAGGAGGGGGAGCGGGAGCAGAGAGAGGCGCcgctgggagaaggagaaggggagCTGGTGGctgaggagggagaggaaggggagagcggggagagagagatgacgAAGAGGAAGTGCAGAAAGAAACCACTTGAAGAGaagccccccaccccaactCCTGACCAGAGCCTGTGACCCCCCACTCCCCCGGAGCCGGAGCCTTCAGCCCCGTGGATCTGCGATTGTCTGTCTCCAAGAACGTTTGTGACTCCTGTTCCTGGATCTTGACACTGTACCTCTGAAATTGTGAGACATTGAATGAGAAATGCTACCATATTTTCCACCACTATCGTCACTAATATCAACTGTTACTACattgactaataataataatactgttccTCATTTTGCACAGACAATGCTTAGTCTTCAGAGAGTAATCTGCCGATTCGAGCGCATTGATGGCTGATGCCtggattcatatatatttatatatatttgttttggtttgttctttttttttctttaagtgcCAAACGTACCTTCCATGTTAATCCAGGTGAAAGATTTTGTCTTCTGATGCTCAAAAAATATGAGGAATAGAACTGATACGCCCTTTCCACAAAGAGTGGTAGGGGTGTGGAGTCCCCTGCCAGGACGCACTGTTCATATGGATGCAGGCTGAGAGTCGGGCGCACTCTCTGCGGAGAACCCCGGTGTGTGCAGGCTGTCCCTGCCGGCTCTCTGGTGACAATGACAACTGCAGAGTCTCAGTGTGGGGTTTTAACCAGGATGCACATGTTCAAGTGGAAGCTGTTTCTCTGTATGCTGGCACTACCGATTCCCCTCCCAGTTCCTCCTACGCTGCTGCTGGGTGCACTGGGAAACAACGCCAGCTGCCCCGGCTCCAGGCCTGCTGGGTGGTGAAAACGGTGTGCTGAAGAACATGGGACGTGTGGAAGATCATGGGACACAGCATCCGTATTGAGAGTCCATATGATGTGTGAGGGGATCGTGTTCCTCACAGTCCTGGTtgcgtgtatgtatgtgtgtgtgtgtgtgtgcgtgccaAATATCTTTACTCCACAGTGGATAGATGTCACAGTCCAGCTGCTTCTAAGAGGGAAACTGACTATAATGACCTGGACTGGGACACTGCAGAGACTTCacgtccctctctctctctctggagtgGAGAGACTGTGTGGATTGTATTGTTTATGGACTTGTACTGGGCCAATCACTATcaatatcttgtttttttttaaggagatttatttgtgttttaatttttgtttcccTTGTTTGAATGGTACTCAGTGGGATTTTTGAGTTTGATAACACTGTCTTTGTACACACTacattacacagacacacaccaccCTCTACCTTTCCATCTGTCTCCCAAACTCCCCCGCTCTTTGTTGCCCTcttattttctctccctttccaggtctcctgtctctctctctgcccactTTTCCATCTTCCCTCCTACTTCTTTACaatgtgctctctctctctctgtgccttcCCCTCCCTCCATCACAGTTCACATCTCATACCTTTTCTCACCCTGTTTCCAGATTAATATAACCTTAAATACAtgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136528 lncRNA downstream 177671 2394749 ~ 2397990 (-) True G109099
TU136514 lncRNA downstream 185109 2346522 ~ 2390552 (-) True G109090
TU136566 lncRNA upstream 2963 2582619 ~ 2585989 (-) True AMCG00006344
TU136621 lncRNA upstream 238813 2818469 ~ 2832329 (-) True G109163
TU136636 lncRNA upstream 308830 2888486 ~ 2891893 (-) False AMCG00006354
TU136638 lncRNA upstream 313238 2892894 ~ 2894534 (-) False AMCG00006354
TU136816 lncRNA upstream 706614 3286270 ~ 3287229 (-) True G109294
AMCG00006333 mRNA downstream 14226 2558875 ~ 2561435 (-) True AMCG00006333
AMCG00006332 mRNA downstream 25481 2540270 ~ 2550180 (-) True AMCG00006332
AMCG00006331 mRNA downstream 161700 2403555 ~ 2413961 (-) True AMCG00006331
AMCG00006328 mRNA downstream 245852 2324505 ~ 2329809 (-) False AMCG00006328
AMCG00006329 mRNA downstream 275137 2278147 ~ 2300524 (-) True AMCG00006329
AMCG00006344 mRNA upstream 1681 2581337 ~ 2586846 (-) False AMCG00006344
AMCG00006342 mRNA upstream 26566 2606222 ~ 2609426 (-) True AMCG00006342
AMCG00006343 mRNA upstream 48839 2628495 ~ 2631707 (-) True AMCG00006343
AMCG00006341 mRNA upstream 70972 2650628 ~ 2659502 (-) True AMCG00006341
AMCG00006354 mRNA upstream 308839 2888495 ~ 2894512 (-) True AMCG00006354
TU136502 other downstream 245670 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 445406 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 551518 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 693824 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 850813 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 1585278 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3434448 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4205657 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4498733 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 6142732 8722388 ~ 8724352 (-) True G110507

Expression Profile