RNA id: AMCG00006341


Basic Information

Item Value
RNA id AMCG00006341
length 1694
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00006341
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2650628 ~ 2659502 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCAGCAGCTGGCCACCCCAATCACCAGCGCTGCCAAGATGCAGTCAAATCGCCATCACCTgggCCGGGGCATGGCAGTGGGATTTCTCAAAGTGGGCTACAAGAAGCTTTTCCTGCTGAACCACAGGGGGGCGCACCTGGAGACAGAGCCACTGTGTGTGCTGGACTTCTACATCAGCGAGAGTCTGCAGAGACACGGCTATGGCAAAGAGATCTTCAACTACATGCTGGAGTGTGAGCGAGTGGAGCCCCAGCAGATGGCCTTTGACAGACCTTCTCCCAAGTTCCAGTCCTTCCTGAAGAAACACTACAGCCTGGAGCACTGTGTCCCCCAGgtcaACAACTTTGTGGTGTTTGACGGCTTCTTCAGGGAGAAATCAGTGGTTCAAGTGAGAAAGCTCCCCCCTCGAAAGCCAGAGGGAGAGATCAAGCCATACTCCCTGTCGGAGAGGGAAGcTCTGAGGGAGGAGCAGAGGACTCTCCCCTGGCCGTTCAGTCGAGccaccctctccccccccccctcctcctcctcctccatgaacCGCTCCCTCAGCGTGGGCTCCTCCCCATCGCACGGCCCCCCCCGGCCACCCCCCGGCCTCAGCGCCCTGCGGCTGGAGAGGCCCCGCCCTCCCCAGTTCAACGGGGTCTCGGCCCTGCAGGACAGCGCCCCCCACAGGACACGCAGGACCAGCCCCGATGGGCCAATGGCACAGTCTCCAGCCCCTGGCATCTGGCCTGTTGCCATGCCCAGTGTGACAGAGACGCAGTCCAACCGCTTTCTAGACGTCCACTCGAGGCTGGAGCAGGAGCAGCCGCAGACTGGTGCCAGGCCGCTTGGGGTGCACTTCCCCGCGCTGGTGGAAATGGGCCAGAGCAGTGCCGGCCGAGCCCGGGTCCCGGAGCCGAGTCTTCCGGGCTCCCCCCAGTGCCCCCCCTCCCGCTCGCCCTCCCCCCTGCTGAGACGGACTCACGGTCACACCCGGGTCCCCTGACCCCCCCGGCCCCTCGGCACCCCAggagagagggcgagagagaCCGGgaccgagagggagagggagagggggagggagggagagagaggcgcCAGCACCCCCCCTCAGGCACAGAGCCCCCCCAGGCCCCCCATAGCCCCCCAACCTCCTGGACCGTGGGGGGGCAGCCCTGTACAGCCCAGTGGGTGAGAAGGAAACAGGAGAACAGGAGCACTAGGCCCTGGTgaagtgagagaggagagagatgggggaagGGAGAAGGTAGGGCAGGTTAAAGAAGTAGTGTAAATCAGAGAGAGGGATGTCTAGTGTAGGAACAGACAGGAggaagagggaagagagagagagatcgggCTGTAGAGGAAGTGAGACTGGGCTGCTGATGCTCTGCACAGATAATCTGTTCCAGGTTCCTTATTCTGTACAGGGGtcagtgtcacacacacacctacagaaATATTCATATACACAATCCCttgttaatttataatatatttgaattatattgcAATGAGCTactccttttgtttttgaagatacAGCACACAAACCCAGTGGTTGCAAATTctacacacacaatgtatttattttaatatttgattttgtattttttatgtatttttggagTGTGATAATTTTATTCAGTGGCATTACGTacctgttttcaaaataataaattccattaatttatttgcaca

Function

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0071929 alpha-tubulin acetylation biological_process
GO:0048666 neuron development biological_process
GO:0019799 tubulin N-acetyltransferase activity molecular_function

KEGG:

id description
K19573 ATAT1, MEC17; alpha-tubulin N-acetyltransferase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136566 lncRNA downstream 64639 2582619 ~ 2585989 (-) True AMCG00006344
TU136528 lncRNA downstream 252638 2394749 ~ 2397990 (-) True G109099
TU136517 lncRNA downstream 294390 2350754 ~ 2356238 (-) True G109091
TU136621 lncRNA upstream 158967 2818469 ~ 2832329 (-) True G109163
TU136636 lncRNA upstream 228984 2888486 ~ 2891893 (-) False AMCG00006354
TU136638 lncRNA upstream 233392 2892894 ~ 2894534 (-) False AMCG00006354
TU136816 lncRNA upstream 626768 3286270 ~ 3287229 (-) True G109294
TU136854 lncRNA upstream 680616 3340118 ~ 3433270 (-) True G109322
AMCG00006343 mRNA downstream 18921 2628495 ~ 2631707 (-) True AMCG00006343
AMCG00006342 mRNA downstream 41202 2606222 ~ 2609426 (-) True AMCG00006342
AMCG00006344 mRNA downstream 63782 2581337 ~ 2586846 (-) False AMCG00006344
AMCG00006340 mRNA downstream 70972 2575661 ~ 2579656 (-) True AMCG00006340
AMCG00006333 mRNA downstream 89193 2558875 ~ 2561435 (-) True AMCG00006333
AMCG00006354 mRNA upstream 228993 2888495 ~ 2894512 (-) True AMCG00006354
AMCG00006357 mRNA upstream 304813 2964315 ~ 2964962 (-) True AMCG00006357
AMCG00006355 mRNA upstream 306316 2965818 ~ 2970452 (-) True AMCG00006355
AMCG00006356 mRNA upstream 315195 2974697 ~ 2982807 (-) True AMCG00006356
AMCG00006361 mRNA upstream 453041 3112543 ~ 3117675 (-) True AMCG00006361
TU136502 other downstream 320637 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 520373 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 626485 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 768791 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 925780 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 1505432 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3354602 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4125811 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4418887 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 6062886 8722388 ~ 8724352 (-) True G110507

Expression Profile