RNA id: AMCG00006343


Basic Information

Item Value
RNA id AMCG00006343
length 759
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00006343
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2628495 ~ 2631707 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCTCCCATAGCTGGCGTGTTTAGGGGTCTTCTTCTGCGTGGGTCGCCTGTCTTTCTGAGAGGCCTCCGAGACGTCCAGGCCACTGCCAGTTGCTGGCCTCTGGCTCGGGTATGGTCGGTGCCAGCATGGCGCTCCCTGAGCTCGGAGGCGGGGGAGAGCCAGCCTGCCAAGAGTGGCAAGTCGAGCAGCGCGGCCGAGGCAGATCCTTTCGACAGCATCGCCCGCTACAGGGAGCGGCCGTGGGAGTACCTGGGGAGCGAGGAGTACGTGGAGCGCTATGGGACGCAGTTGGTGTGGGCCGGCTACAGGAGGAACCACAAGGGAGGGATCCCCCCACAGAAAACACGCAAGACCTGCATTAGAGGAGACAAGGTCTGTGGGAACCCCTGTCCCATCTGCAGAGACCCCAAAATCATCGTGCACCACCagAATGTGAAGCTGCTGGAGCAGTTCATCAGCCCTCACAGTGGCAGTGTGTACGATGCCACGCGCACAGgTCTGCTGCCGTTCCACGTCCCCTTTGTGGATTTCGAGGGCGAGGATTATTCCAACACCCACAGTGCCGTGAcccacacccctccccctccttttCTCACTGCCAAGGCCGAGGGAGGGGAGAACAGCAGCTCGGGGGGGCAGCCCTGGTACAGCTGGTACCACCCCACCCAGCCTGACCCCCAGGAGCTGTGCCGGGTCACGAAGCTGTACAGGAAGTACCTCAAACAGGAAGTGCCCACCTCTGCTGGGCAGTGA

Function

GO: NA

KEGG:

id description
K16174 MRPS18B, MRPS18-2; small subunit ribosomal protein S18b, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136566 lncRNA downstream 42506 2582619 ~ 2585989 (-) True AMCG00006344
TU136528 lncRNA downstream 230505 2394749 ~ 2397990 (-) True G109099
TU136517 lncRNA downstream 272257 2350754 ~ 2356238 (-) True G109091
TU136621 lncRNA upstream 186762 2818469 ~ 2832329 (-) True G109163
TU136636 lncRNA upstream 256779 2888486 ~ 2891893 (-) False AMCG00006354
TU136638 lncRNA upstream 261187 2892894 ~ 2894534 (-) False AMCG00006354
TU136816 lncRNA upstream 654563 3286270 ~ 3287229 (-) True G109294
TU136854 lncRNA upstream 708411 3340118 ~ 3433270 (-) True G109322
AMCG00006342 mRNA downstream 19069 2606222 ~ 2609426 (-) True AMCG00006342
AMCG00006344 mRNA downstream 41649 2581337 ~ 2586846 (-) False AMCG00006344
AMCG00006340 mRNA downstream 48839 2575661 ~ 2579656 (-) True AMCG00006340
AMCG00006333 mRNA downstream 67060 2558875 ~ 2561435 (-) True AMCG00006333
AMCG00006332 mRNA downstream 78315 2540270 ~ 2550180 (-) True AMCG00006332
AMCG00006341 mRNA upstream 18921 2650628 ~ 2659502 (-) True AMCG00006341
AMCG00006354 mRNA upstream 256788 2888495 ~ 2894512 (-) True AMCG00006354
AMCG00006357 mRNA upstream 332608 2964315 ~ 2964962 (-) True AMCG00006357
AMCG00006355 mRNA upstream 334111 2965818 ~ 2970452 (-) True AMCG00006355
AMCG00006356 mRNA upstream 342990 2974697 ~ 2982807 (-) True AMCG00006356
TU136502 other downstream 298504 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 498240 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 604352 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 746658 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 903647 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 1533227 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3382397 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4153606 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4446682 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 6090681 8722388 ~ 8724352 (-) True G110507

Expression Profile