RNA id: TU136566


Basic Information

Item Value
RNA id TU136566
length 459
lncRNA type sense_over
GC content 0.54
exon number 6
gene id AMCG00006344
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2581337 ~ 2586846 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGGCAGCTCAGTCTCTTGCAGTTTGTTCTTCATGAGAGAGCTCCAGCAGGGATGGCGTTAATCCCCGCAGCAGCCGCCGACTCCGGCCGCAGAGCTTCAGACCCTGTTGCACTGGGAGGCTGATGTCTTGAGCACCAGGACAAGGACTCGATGGCCGATTTGAGGGTCCGCTGCTGAGCTCTGATTGGCTGTAGCTGTGGTGACCACAATGGCAGGAGAGGAGCGGAGCTGCTAAAGcGTTTGGGAACAGGTCTGTGCAGATGAGGAACCTGGCAGAATGATCCCTGCATGGCTTCAGTAGCCAAGAACTCCGACTGACTCTGTGTCCCAGCTCCTGTTCTGGAGTGACTGTCCAGGGACTGACCTGGCCTTACTGAGTGAGAAGTGCTTTGGAAGTGGGAAGACTAACTGGAaactgatgtatttttaataaaaacttaatTGAACATGTCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136528 lncRNA downstream 184629 2394749 ~ 2397990 (-) True G109099
TU136514 lncRNA downstream 192067 2346522 ~ 2390552 (-) True G109090
TU136517 lncRNA downstream 226381 2350754 ~ 2356238 (-) True G109091
TU136519 lncRNA downstream 226381 2350754 ~ 2356238 (-) False G109091
TU136520 lncRNA downstream 226381 2350754 ~ 2356238 (-) False G109091
TU136621 lncRNA upstream 232480 2818469 ~ 2832329 (-) True G109163
TU136636 lncRNA upstream 302497 2888486 ~ 2891893 (-) False AMCG00006354
TU136638 lncRNA upstream 306905 2892894 ~ 2894534 (-) False AMCG00006354
TU136816 lncRNA upstream 700281 3286270 ~ 3287229 (-) True G109294
TU136854 lncRNA upstream 754129 3340118 ~ 3433270 (-) True G109322
AMCG00006340 mRNA downstream 2963 2575661 ~ 2579656 (-) True AMCG00006340
AMCG00006333 mRNA downstream 21184 2558875 ~ 2561435 (-) True AMCG00006333
AMCG00006332 mRNA downstream 32439 2540270 ~ 2550180 (-) True AMCG00006332
AMCG00006331 mRNA downstream 168658 2403555 ~ 2413961 (-) True AMCG00006331
AMCG00006328 mRNA downstream 252810 2324505 ~ 2329809 (-) False AMCG00006328
AMCG00006342 mRNA upstream 20233 2606222 ~ 2609426 (-) True AMCG00006342
AMCG00006343 mRNA upstream 42506 2628495 ~ 2631707 (-) True AMCG00006343
AMCG00006341 mRNA upstream 64639 2650628 ~ 2659502 (-) True AMCG00006341
AMCG00006354 mRNA upstream 302506 2888495 ~ 2894512 (-) True AMCG00006354
AMCG00006357 mRNA upstream 378326 2964315 ~ 2964962 (-) True AMCG00006357
TU136502 other downstream 252628 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 452364 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 558476 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 700782 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 857771 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 1578945 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3428115 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4199324 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4492400 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 6136399 8722388 ~ 8724352 (-) True G110507

Expression Profile