RNA id: AMCG00006345


Basic Information

Item Value
RNA id AMCG00006345
length 4442
RNA type mRNA
GC content 0.44
exon number 17
gene id AMCG00006345
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2730037 ~ 2751105 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggCTGATACAGTAGAAAGTAAGCGGACGGTGTTCAGTGTGCAGCAGAGTCTCTGCAGGTGAGCACACTGACTGGCTCACTTTGAAAAAGGGAGctGAACTCGGAAATCTTTGTACTGAATCGCAAAGCAGCAACCTGAAGAGAATGGCTCCTTATTGGGCTTTCCTCGTACTGGGTTTGTCTCTCCAGACAGCATGGGGTCGGTATCCCCTGTCACTGAAACCGATGCTGAtgctggggaaaaaagaaacattattgACATCAATAAAGGTTTAGATCTAATGGAAGGGGACATAATGGTCCGCAAGTTCAAAGACAGGAACTCCATCGTGGGCGATCAGTACAGGTGGCCACAACCTGTTCCCTACTACCTGAATGACAGCCTAGagatGAATGCCAAAGCActcattttaaaagccattgaGCAATTTCGGCTTAAGACTAGCATTGACTTCAAGCCCTGGGAGGGAGAACCCAACTACATTTCACTCTTTAAGGGCAGCGGATGTTGGTCTTACGTTGGGAATCAACGGACGGGAAAACAGGATCTTTCCATTGGACAGTACTGTGACACCATTGCCATTATTGAACATGAGTTGCTTCATGCTCTGGGGTTCTGGCATGAACATACCAGAGCTGACCGTGACGATTACGTCACTATCATGTGGGATCAGATTATGCCAGGTGAAGAGCACAACTTTGATAAGTACAGTAACAGTGATGCCCTGAATGTGTCGTATGACTTCACCTCCGTGATGCACTATGACAAGAATGCCTTTAGCACCGGAAATCTCCCAACCATCGTCACCAAGGATCCTCAGTTTACCAATGTCATCGGCCAGCGCTTGGACCTCAGTGAGCGGGACATTCTGAAACTCAACAAGCTCTACAACAGCAATTCCTCAGTGACATTTCTGGACCAGTGCAGTTTTGAGTCGGACAGTATCTGTGACATGATTCAAGGCACAGGGGACGATGCGGACTGGAAGTTTGTGACACAAGTCCCTGGAAAACTTTTGTCTGATCACACCTACCTGGGGTCAAAccGGCACTTCATGCACTTCAGCACAGCCACAGGCAGTGCCAGAGACAAGGCCTACCTGGAAAGCAAAACCTTTCAGCCCAAGAGAAGCTTCCACGGGAGTGCGGACGACCAGTTGAATGTCTGGATCAGAGAGTATGACTCGGCTCACCCTACTGGGACTCTGAGGCTCATGGGGAGGGTCACAGGTTCCCCGGGAGATTCCTGGCAGCTGCATCACATCCCCTTGAACGCAACCAAGCCGTTCCGAGTCGTCTTTGAGGGCAGAAAAGGAGCAGGAAGTTCAAGCGGTGGTCTCTCTATTGATGATGTCAACCTCTCTGAGACACAGTGCCCCGCCCACACCTGGCACATCAGAAACTTCACTCAGCTTTTAGAGACCACTAAACCTGGATCACAATTTTTTAGTCCACGATTCCAGTCTAATGAGGgatacacatttcagattagTGTGTATGTCAATGGTACAACAAGCTACCCAGGTAACCTGGCTGTATTCTTCCACCTCACCTCTGGGGAAAACGATGACCGACTGCAGTGGCCCTGTGCTTGGAGACAGGGGACAATGTTACTGATGGACCAAAACCCCGACATTCGCAAGCAGATGAGCAACCAGAGGAGTATCACGACTGACCCTGAGATGAGCACAATTACatTGAATGGCAGCTCCCGTCTGTTTTGGGATGACCCTCGCAAAGTTGGGAATCTTGTCACTGATGAAAACGGAACGTTGTTTTACCGAAGCCCTGGATATGGATACAATGTGTTTATCAGCCACGACCGACTAAGGAGCAGAGAGTTTATAAAGGGAGATGATGTCTTCTTCCTCCTGACCATGGAAGATGTTTCCCGCCTCCGATCTAGTCAGACACTTTGGACGACCACACAGCCCTCCACCATATTTGAACCAACCACAGAGCCCTCCACATTTGAACCAACCACACCAGACCTGTGCAATGTGTTTTGGTGCTGGTCTGGAAGTATCTTTGGCAGCTCCCCTGGGATGGCGGCCTCATCTCTGCTGCTCACTGTGTCCTTGCTGGCTTCGCTCCTGCAGTAGACTCACATCTAGGCACAGATGGCACACCCATTGTACCCCTACTGTACTGCAgtttcaccacacacacactcttactaTAAAGAGACTACTGTCACTACAGCCACCTACTGCAACATGGCTGTCGTcccatatgaaaaaaaaaaaatgcatctacAATTCATTTCACCAGAAGTATTCTATTGTACTTGAAGCATAACCCCTTACTATAACAAGTCTTTTCTATTGTACCTATACTAACAGCCTCCACTGTAACAATTATACCTTTACTATAACACCTCTATAACACCACAACTTTTCTCCTGTGCTGTTATTAAAGCCTCATATTGTAGCCAGACTATTGACCAAACTGTTTCTCCAGTTACCTCTTCATattatggtttaaaatgtaaagctgcTCTCTCCCTCAACGTCTCCTTGTCCTtgtttaaaacttatttttttattttttttaagtgaaagaACAGTAAAGCTTAAAATAGCTGAGTTGTAAATTGTGTAAAACATTTGGACATCATTATCCTACTTGAAACCTGGTGTCGTGCAGATGTACCTACAACCAACATAAAATGTGGCAGAGTCTCGGGGGGATAATAGTGTGGTACAGAGGGGAACTCAAAAACTTAATCTCCCCTGTTAAGAGAGGTCCTTCAAATTTAAAGAGAGGTCTTACAATCTGACCAGTAAATCGATCTCTGTGCAGTTTACATGCCAACATCTGACTCCCTCTACTATAAAGAGGATGGTTTCCATGACCTCCAAACTCAAATTGTCCACTTCCAAATCCTGGTCTTGGTTCTGCTCAGTGAAGATCTTAAAACCAGGACTGACTACATCAGCACAGAGGGCAACACCCACGTATTCGGAGACACCCCTCCATACCTCACACATGAGCAAACAAAGGAACGGCCACAATAGTGTGGTCAACAAGAGTGGGAAACAGGTACTGCATCTCTTTAAAGGGCTGGGTCACTATATTGTCAATGGCAGGAGCAGGGAGGACTCTCTGGGGAGATTCACCTACTCCTCGGCTCTACTGACGAATGCATGTTGACTATGCAATAATGGACATAGacccctaaaataaaaatgtattcatagtCAGGCAACAGACTCCCCTGTCAGACCACAGTCAGGTAAACCTATACTATGCCCTGAGAGAATACAAACACCTcctgagaaagaaaaagcacaacTATTTAACCAGAAAATTATATCAAATTGAAGATGCAATTGACCAAAACTCTTTTTgggaattgtttaaaaaatgtgaaaataaataaataaacgaattATCCATTCAAAATGCTAATATATGGAAACCCTTtagcaaaaaaaattaaataaagatttaaatttGGACCAGTGCCCATATTCATAAAGTGTCTGAGAGTGATAAATCAGTCCTAAGtgcctgaaatatctgagagtgaTGTCAATTTGGTCCTACATTTACTGTTAggagtaaaagctattcataaagattctttagaagtaaaagtactacTAACTCaaccaatatttaggagacctcacAAGGTCCCCTAACTAACTGGGTGTCATCAAGGattttgaatcacacattcagaatgtgtcgagatctcaGTATCCTAAGCAGTGTTTCCCAAGCACCAGTCTGCGGGACATTGCTACTCCTCAAATCCAcactaaataatacataaaaatcatAGGAACATAATTGAAAATGCTTCAAGTGTTCTGTATTGgtgttgtatttgttattgatATGTGGGTCACCTGAGGTGCCACAGGATCAGAATGACTAGAAGGGAGGGTAAAAGGGTTAATCTCATATTTTGATATCTTGCCAGTAGGGAAAAAGGTGGGTGTGGAGTCAATGAGTGAGTGACACCTGAATTGAGTCTGGCTAATTACTTTTGAGAGGCTCAAACTAAAAGGGATTAATTAACACAGCCTGTTAAGCAACATCAGGGCTAATATGACGTACACATGTGCGcatgttttatatgtgtatagGGTGTGTAGTGCAATATGTGTCACTGTACTAAAAAAGAAAGTGTGGCTAAAGTGAGGCCTCTTTCATCACAAATGGGCTGTGTTCTGGGTTCAGGGCGGCAACAGAATTTTTGTTTCActaattttctatttaaaatgcttaCTATGTTTTCACAAGTTTGGTTTCTACGGATACANNNNNNNNNCTAACTAACTAACTTCATTAGTGGAGATGAGCAACTGAATACAACATGTTGGTGATGACAGATCTATCTGAAAATATTCCTCAGGGCAAGAGAGCTACTGCTTACCTTTACTAATCTTTATAgcttttttgtgttgatttctgtgaataaatgattattgc

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K08076 E3.4.24.21; astacin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136405 lncRNA upstream 211503 2436058 ~ 2518534 (+) False G109011
TU136404 lncRNA upstream 277208 2436058 ~ 2452829 (+) True G109011
TU136402 lncRNA upstream 326886 2402903 ~ 2403151 (+) True G109010
TU136392 lncRNA upstream 373799 2350754 ~ 2356238 (+) True G109004
TU136373 lncRNA upstream 437141 2292697 ~ 2292896 (+) True G108987
TU136687 lncRNA downstream 253751 3004856 ~ 3028646 (+) True G109217
TU136688 lncRNA downstream 265674 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA downstream 315257 3066362 ~ 3069228 (+) True G109218
TU136755 lncRNA downstream 483800 3234905 ~ 3236401 (+) True G109260
TU136762 lncRNA downstream 496764 3247869 ~ 3252080 (+) False AMCG00006366
AMCG00006339 mRNA upstream 61822 2664813 ~ 2668215 (+) True AMCG00006339
AMCG00006336 mRNA upstream 80928 2641412 ~ 2649109 (+) True AMCG00006336
AMCG00006335 mRNA upstream 104404 2613092 ~ 2625633 (+) True AMCG00006335
AMCG00006338 mRNA upstream 124553 2599254 ~ 2605484 (+) True AMCG00006338
AMCG00006337 mRNA upstream 135960 2589384 ~ 2594077 (+) True AMCG00006337
AMCG00006349 mRNA downstream 44141 2795246 ~ 2801973 (+) True AMCG00006349
AMCG00006350 mRNA downstream 50965 2802070 ~ 2807457 (+) True AMCG00006350
AMCG00006351 mRNA downstream 58235 2809340 ~ 2811305 (+) True AMCG00006351
AMCG00006348 mRNA downstream 61226 2812331 ~ 2813489 (+) True AMCG00006348
AMCG00006346 mRNA downstream 81400 2832505 ~ 2846173 (+) True AMCG00006346
TU135896 other upstream 917362 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 990770 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1300050 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1443985 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1739215 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 610249 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 752076 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 818934 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 848136 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 886638 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile