RNA id: AMCG00006348


Basic Information

Item Value
RNA id AMCG00006348
length 249
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00006348
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2812331 ~ 2813489 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGATGAACAGCCAGAGGAGTGCCACGACTGACAATGAGATGCCTGCGGtggacagcagctcccagcTGTTCTGGGATGACCCTCGCAAAGTCGGGAGTCTTGTCACTGATGAAAACGGGACATCGTATTACCGTGGCCCTGGATATGGGTTTACATTAATCAGCCATGAACAACTGAGGACCAGAGAGTTCATAAAGGGAGATGATGTCTTCTTCCTCCTCACCATGGAAGGTAAGGAGAACTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136405 lncRNA upstream 293797 2436058 ~ 2518534 (+) False G109011
TU136404 lncRNA upstream 359502 2436058 ~ 2452829 (+) True G109011
TU136402 lncRNA upstream 409180 2402903 ~ 2403151 (+) True G109010
TU136392 lncRNA upstream 456093 2350754 ~ 2356238 (+) True G109004
TU136373 lncRNA upstream 519435 2292697 ~ 2292896 (+) True G108987
TU136687 lncRNA downstream 191367 3004856 ~ 3028646 (+) True G109217
TU136688 lncRNA downstream 203290 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA downstream 252873 3066362 ~ 3069228 (+) True G109218
TU136755 lncRNA downstream 421416 3234905 ~ 3236401 (+) True G109260
TU136762 lncRNA downstream 434380 3247869 ~ 3252080 (+) False AMCG00006366
AMCG00006351 mRNA upstream 1026 2809340 ~ 2811305 (+) True AMCG00006351
AMCG00006350 mRNA upstream 4874 2802070 ~ 2807457 (+) True AMCG00006350
AMCG00006349 mRNA upstream 10358 2795246 ~ 2801973 (+) True AMCG00006349
AMCG00006345 mRNA upstream 61226 2730037 ~ 2751105 (+) True AMCG00006345
AMCG00006339 mRNA upstream 144116 2664813 ~ 2668215 (+) True AMCG00006339
AMCG00006346 mRNA downstream 19016 2832505 ~ 2846173 (+) True AMCG00006346
AMCG00006347 mRNA downstream 52814 2866303 ~ 2882217 (+) True AMCG00006347
AMCG00006358 mRNA downstream 94683 2908172 ~ 2934561 (+) True AMCG00006358
AMCG00006352 mRNA downstream 123454 2936943 ~ 2944472 (+) True AMCG00006352
AMCG00006353 mRNA downstream 141846 2955335 ~ 2960532 (+) True AMCG00006353
TU135896 other upstream 999656 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 1073064 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1382344 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1526279 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1821509 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 547865 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 689692 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 756550 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 785752 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 824254 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile