RNA id: AMCG00006352


Basic Information

Item Value
RNA id AMCG00006352
length 1752
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00006352
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2936943 ~ 2944472 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGGCTCAGCCCCTGTCCTGCTGCACTCTCCCTCCATTAATTTGTCTGTGTCGCTGGATCCCTCCGTCCATCCGTCCGTCACTCCGAGACACAGAGCTGGACACTATGAGACTGCTGCTGGTTTGGTCAGTGCTGACTGGAGCTGCCTGGAAATACATAgctgGCGAAATAAGAACAGCAACAGCACATACAGGAGGGGAGGTCCACATCTCCTGCTCTGCTAAAGGACCAGAAATCACCTGGGACTGGGAGCCCAAATACCCCAAGTGTGCTGGAGTGAAGGGGAACTGGCAGCTGATCTACAGCATTGACAAAAGTGGAAACCATAGAGTGGAGTCAGGCAGGTTTAGGAACAGACTGACAGTGACTGGAGATCCTGAATTTATACTGGAGCTGAAGGACGCGGTCATGAGTGACGCTGGAGTGTACAGCTGTTATGATCGTGCAGGACATTGGGACTCTGTTCATCTGAGTGTGAATGCAGGCTGCTACAAGAATTTGAAAGTGACTCCATCTAACCAGTCAGTCAGCCCCAGAGTGGGAGAGTCTTTTAGTTTCATTTGCTCCCACTGTGACAGTACAGAGCCACCAGCAACTGGCTTTGACTGGAGCCTCAATGGACAGCCCATCAATAGAGGCTCTAGGGGATTTGTGATGGGGAAGAAGCATCTGACTATACAGAGAGTGGATGAGAGGCATGAGGGCAGAGTGACCTGTGGCTCAGGGGGTCAGAGGACAGAGCTGTGCCTGACAGTGGACAACACATCACTGGGATCCACTGCCACACCCCCACCTGGAGACCCCACACTGAGGCCCACCACTGAACAGCCAGGCAGAAGAGGACGAAGAGCAGTGTATCAGACCATAGATGAAGTGCAGTACACCGCAGTCAGTTTCACAGCAGCGGAAAGCCGCCCCCTCAGAGACCACCCGGCCACACAGGACTCCACAGTGTATTCGCCCATCATGACCAAATAGCACCATCGAGTGGCAGAATCACGAACTGAATTGTGAATCTGTTTAACCCCTTCCGTTCTggatgtttatattattattactgttgttgttatgaattatcataataatcattatgCCATCATCAACATCATTTAGTCTTAGTTGTTAGTTTTTCCAACATAAACTCTGCAGGTTCGTGCACAACTGAAATTCTGAACTAGGATCTCAAAGACTGTCTTTATAGATGCATAGTCTTCATGGATATCTTAGCCCCATCTTACTTAAAGAGAAACAGGAAGGATTACTGATTTTGCTCCTATCTTATCATCTACTTGAACGCAGAAGCTACATGTTGGGACTTGAACGCTGAACTCTGTGTTTCAAAAGCATCAGGGATAAAGttagtgctctctctctctctctctctctctctctctctctctctctctctctctcaggtattAAATGTATACCCCACGgtgatttgttagttttttatttgttttgtttttactgtaccGTAGCAGTTAATGACAACTGGAGTCTATGAGTGTTGTACTTATGAGCAAAGCgcatgatgtgtgtgtatatgactaattttttttttttacttgaatcTGAATTGAAGTTGAAGATCCATATACACACTGTATAGTGTACTGTAAAGACCACTGCACACGTGTTtagttaaatgtaattataaacaataatatgttaattgaatttgttatttctgttatgatgacattattattattattattattattattattattattattattattatt

Function

GO:

id name namespace
GO:0005539 glycosaminoglycan binding molecular_function
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136405 lncRNA upstream 418409 2436058 ~ 2518534 (+) False G109011
TU136404 lncRNA upstream 484114 2436058 ~ 2452829 (+) True G109011
TU136402 lncRNA upstream 533792 2402903 ~ 2403151 (+) True G109010
TU136392 lncRNA upstream 580705 2350754 ~ 2356238 (+) True G109004
TU136373 lncRNA upstream 644047 2292697 ~ 2292896 (+) True G108987
TU136687 lncRNA downstream 60384 3004856 ~ 3028646 (+) True G109217
TU136688 lncRNA downstream 72307 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA downstream 121890 3066362 ~ 3069228 (+) True G109218
TU136755 lncRNA downstream 290433 3234905 ~ 3236401 (+) True G109260
TU136762 lncRNA downstream 303397 3247869 ~ 3252080 (+) False AMCG00006366
AMCG00006358 mRNA upstream 2382 2908172 ~ 2934561 (+) True AMCG00006358
AMCG00006347 mRNA upstream 54726 2866303 ~ 2882217 (+) True AMCG00006347
AMCG00006346 mRNA upstream 90770 2832505 ~ 2846173 (+) True AMCG00006346
AMCG00006348 mRNA upstream 123454 2812331 ~ 2813489 (+) True AMCG00006348
AMCG00006351 mRNA upstream 125638 2809340 ~ 2811305 (+) True AMCG00006351
AMCG00006353 mRNA downstream 10863 2955335 ~ 2960532 (+) True AMCG00006353
AMCG00006359 mRNA downstream 44671 2989143 ~ 3001290 (+) True AMCG00006359
AMCG00006360 mRNA downstream 149610 3094082 ~ 3111575 (+) True AMCG00006360
AMCG00006364 mRNA downstream 206600 3151072 ~ 3177539 (+) True AMCG00006364
AMCG00006367 mRNA downstream 275747 3220219 ~ 3232977 (+) True AMCG00006367
TU135896 other upstream 1124268 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 1197676 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1506956 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1650891 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1946121 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 416882 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 558709 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 625567 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 654769 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 693271 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile