RNA id: AMCG00006354


Basic Information

Item Value
RNA id AMCG00006354
length 878
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00006354
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2888486 ~ 2894534 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGCAGTTCACAGGAGAGGAGCTCCTGTAGTCAGTGTAACAGCAGTCTAGGGTAGGAGAGTGTAACAGCATAGTGTTAGTACAGATCAGGGGACAGCCAGGCTCCGACGCCATGAGAGGGTGCGGCTCTCACTCCATTCTCCTTCTCCTGCTGATGGCACCGGGCTGGGAGTCTAGAGACAAAATCTCAGTGGCAGTAGATGCAGATGCGGTGTATGTGGTTGTGCCTGTTGTTGTTGCACTGGGCTGTTTAGCGCTGCTGGGAGTCCTGTGGTGCAGAAAGAGGACCAGAGAAAGAGGACCCGAGGACCAGCCCGAGCCCTTCTACTCGGAGGTGAAGGACCACCCAGCCTCGCAGAGCAgaccCCAGGACCAGCCGGAGCCCTTTTACTCTGTGGTGCAGAAGCCCGTCGCTTCACAGCACAGACCCCAGGACCAGCCTGAGCCCTTTTACTCAGTGCTGAAGAAGCCCACAACCTCACAGCACAGACCCCAGGACCAGCCCGAGCCCTTTTACTCTGTGGTGCAGAAACCTGTGGCTTCACAGCACAAGACCTGTTGAAGAGGAAAGCAGAGATTATGacaatgaagagagagagatggacagagagagagagagagagagagagagatggaaggcTGTGTGCTGTAATAATGTTGTCGGTTTgggttgatttttgtttgtgtttgtagtttTGCATTgtaatctctccctctctcccatgcAGTGTGTGTTGATAATGGAGGGATTCTCTCTCATTACCACTCTCTCACCCCGTGTCTCCTGTTCTCTTGTTCATTACGTTGGATTTTGCTGTTCAGTTTTCTgttggaattttttttttataacaattgaaataaaaaataaataaaaatca

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136621 lncRNA downstream 56166 2818469 ~ 2832329 (-) True G109163
TU136566 lncRNA downstream 302506 2582619 ~ 2585989 (-) True AMCG00006344
TU136528 lncRNA downstream 490505 2394749 ~ 2397990 (-) True G109099
TU136517 lncRNA downstream 532257 2350754 ~ 2356238 (-) True G109091
TU136816 lncRNA upstream 391758 3286270 ~ 3287229 (-) True G109294
TU136854 lncRNA upstream 445606 3340118 ~ 3433270 (-) True G109322
TU136866 lncRNA upstream 472685 3367197 ~ 3369548 (-) True G109334
TU137003 lncRNA upstream 654102 3548614 ~ 3561944 (-) True G109432
TU137017 lncRNA upstream 692084 3586596 ~ 3655123 (-) False G109439
AMCG00006341 mRNA downstream 228993 2650628 ~ 2659502 (-) True AMCG00006341
AMCG00006343 mRNA downstream 256788 2628495 ~ 2631707 (-) True AMCG00006343
AMCG00006342 mRNA downstream 279069 2606222 ~ 2609426 (-) True AMCG00006342
AMCG00006344 mRNA downstream 301649 2581337 ~ 2586846 (-) False AMCG00006344
AMCG00006340 mRNA downstream 308839 2575661 ~ 2579656 (-) True AMCG00006340
AMCG00006357 mRNA upstream 69803 2964315 ~ 2964962 (-) True AMCG00006357
AMCG00006355 mRNA upstream 71306 2965818 ~ 2970452 (-) True AMCG00006355
AMCG00006356 mRNA upstream 80185 2974697 ~ 2982807 (-) True AMCG00006356
AMCG00006361 mRNA upstream 218031 3112543 ~ 3117675 (-) True AMCG00006361
AMCG00006363 mRNA upstream 225765 3120277 ~ 3124200 (-) True AMCG00006363
TU136502 other downstream 558504 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 758240 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 864352 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1006658 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 1163647 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 1270422 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3119592 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3890801 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4183877 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 5827876 8722388 ~ 8724352 (-) True G110507

Expression Profile