RNA id: AMCG00006355


Basic Information

Item Value
RNA id AMCG00006355
length 2014
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00006355
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2965818 ~ 2970452 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCACGATCACAGCCTGGTAGAACAGGCAGACTGCGAGGAGAAGGGGAGAGTGTGGGCAGGGAGTCAGGGAGCCACGGCAGTGGGGACGAGAGGTTGGGGCGATGGTGCAAGGGAGGAGCTGCTGTGGGGGAGGATGGCTGCCATCTTTGACACTCCATACAGTCCGATGAGCGTGCCGCTCTCTCTGCACCCTGCGCGGCGTGTCGTGCGTGTCGTGCGTGTCGTGCGTGTCGTCGCTGCCATGGCCCTGGACTTCAGCAGTGAGGTTTTCTGCTGCTTCGCCTTCTACgcgatgctgctgctgctgaagatGTACTTTGTAGCCATACTGACCGGGCAGCTGCGCCTCCGGAGAAAGgcGTTTGCTAACCCGGAGGATGCTCTCCGTCACGGCGGCCTGAAGTTCTATCGGCGGGACGAGGATGTGGAGCGCTGCCGCAGgcTGCACCGCAATGACCTGGAGTGCATCCTACCCTTCCTGTTGATAGCGGTCCTGTACTGCCAGCTGGAGCCCTCGCCCGCCATGGCCAGATTCTACTTCCGCTCCTTCTTCCTGGCCCGGGTGGCACACACATTCGCGTACCTGTACGCCCTGCCAGCACCCTCCCGCTCCCTGGCCTACACCCTAGGTCTGCTGCCCTGCCTCTCCATGGCACTGAAAATACTCATCAACGTAGCCTCCTACTGGTAGAGGATGGACAACAgcggcaacaacaacaacaacaacaacaacaacaacaacgaatgcagcaaaatgtgattttgtcttttcagtctgaaaaaaagaaaaaggtgggGGGGAATAGATAAATGtggttgcatttattttatttaaatttttgacCCCCCCTTTTGTGTTTTCTGGTGTTCGATCCCCCCCAAGAATAGGCTCTTGAGCAGGGCTCTGCACAGGGGGGGCTGGGAGATTGACTCCAGCAGAGCCACAGCAGCGAAGTGAGGAACAGGTCAAAGGTGCGCATCAGTCTTTCAAATCCTCACGCGTTGAAGTGGCAGCTGGGTGTAGCACTGCCTTTTTAAATGGTGTTTTTTCTccgtgtttatttaaatatttatttttcatctatCAAGAGCTTTCCTCTCAGTTCTGACTTCGGAATTAGGTGATTGTTACTTATTTTGGAGTACTggattgtgggttcaaatcctgtgCCCCAAGCAAGGTATTTTCACCACAAAACTAGTccagttaaaaatgaaaaagatttgTATGTAAAGAATAACAATTTGTAACTGCAGGGAGTTGATTTACACTGAAATTtgaagtagtaataataataataataaaattaataatattctaGTTGTGGATCTTGGTAATTATAGAAGGGGACAggagaaaagtgtgtgtgtgtgtaaagtccTTTATGGTCAAGGCATCTGGACTCATGCTGGGGGAACAGCAGCTGTTCCTTAAAGCCTCTGTATCCTGCTGTGTGAGAACTGCGGTGTCTGCTGTGACATGTTGAGAAACCCCCCTGTAGTTACTCGCTGCTCCCTCCTCTGAAGGGAGAGTCCATGTTGGCTCCAATCTGCAGACTGTCAGCCAATCCTGAGAAAGGAAAATGCACAACTCGTGGTGTTTGTAACTGGCAATATTGATGTATATAGTCTACTAAAGCTAACTACTGCTACATTCTTCtgtatatatgattatatttcttagtagatATGATAAGCACATGGACTCAATGTATTGCTATTgtctgaattgttttatttatgttatttaataaaatactgttaacaaaaccatacaaaaatTCTCCCAGCTGCTGTCAATGGAATCTTGGCTGGtaattgctgtttgtttgtatgttattCTTGAGCCAGTATTATAGGTCTTATTGATTCATTAGGCAGGATGACTGCTACATTTCTATAAATTAGATGTCGGCACCACAGGAGGATTTAATTTGTTATGTAAAAAGGCTTGTTGaactgttacatttttttttgtatgtttttcaaataaatgctttttttgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136638 lncRNA downstream 71284 2892894 ~ 2894534 (-) False AMCG00006354
TU136636 lncRNA downstream 73925 2888486 ~ 2891893 (-) False AMCG00006354
TU136621 lncRNA downstream 133489 2818469 ~ 2832329 (-) True G109163
TU136566 lncRNA downstream 379829 2582619 ~ 2585989 (-) True AMCG00006344
TU136528 lncRNA downstream 567828 2394749 ~ 2397990 (-) True G109099
TU136816 lncRNA upstream 315818 3286270 ~ 3287229 (-) True G109294
TU136854 lncRNA upstream 369666 3340118 ~ 3433270 (-) True G109322
TU136866 lncRNA upstream 396745 3367197 ~ 3369548 (-) True G109334
TU137003 lncRNA upstream 578162 3548614 ~ 3561944 (-) True G109432
TU137017 lncRNA upstream 616144 3586596 ~ 3655123 (-) False G109439
AMCG00006357 mRNA downstream 856 2964315 ~ 2964962 (-) True AMCG00006357
AMCG00006354 mRNA downstream 71306 2888495 ~ 2894512 (-) True AMCG00006354
AMCG00006341 mRNA downstream 306316 2650628 ~ 2659502 (-) True AMCG00006341
AMCG00006343 mRNA downstream 334111 2628495 ~ 2631707 (-) True AMCG00006343
AMCG00006342 mRNA downstream 356392 2606222 ~ 2609426 (-) True AMCG00006342
AMCG00006356 mRNA upstream 4245 2974697 ~ 2982807 (-) True AMCG00006356
AMCG00006361 mRNA upstream 142091 3112543 ~ 3117675 (-) True AMCG00006361
AMCG00006363 mRNA upstream 149825 3120277 ~ 3124200 (-) True AMCG00006363
AMCG00006362 mRNA upstream 167455 3137907 ~ 3139535 (-) True AMCG00006362
AMCG00006365 mRNA upstream 208277 3178729 ~ 3203887 (-) True AMCG00006365
TU136502 other downstream 635827 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 835563 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 941675 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1083981 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 1240970 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 1194482 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3043652 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3814861 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4107937 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 5751936 8722388 ~ 8724352 (-) True G110507

Expression Profile