RNA id: AMCG00006358


Basic Information

Item Value
RNA id AMCG00006358
length 2415
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00006358
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2908172 ~ 2934561 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAACCAGAACCCGGTTGCTGCTACAAGAACTTAAGACTGACTCCATCTATCCAGACAGTCAGCCCCAGAGCGGGAGAGTCTTTCAGTTTCCATTGCTCCCACTGTGACAGTACAGAGCCACCAGCAACTGGCTTTGACTGGAGCCTCAATGGACAGCCCATCAATGGAGACTCTGAGGGATTTGTGGTGGGGGAGAAGAATCTGATGATACTGAGAGTGGATGAGAGGCATGAGAGGCAGAGTGACCTGTGGCTCTGGGGGTCAGAGGACAGAGCTGTGCCTGACAGTGGACAACACATCACTTGGGACCACTGCCACACCCCCACCTGGAGACCCCACACTGGGCCACTCCACTGCGTCACCCTGCTCTACACCGGCGCTAAAGTCTGCGTCCTGACTGCGATGATCCTGGCTGTGGTCGTGTGTGAGATCAAGGCCCAACGTGGAGGACCAAAAGTCATCTGGGTCTGGAAGCCCAGCTACCCTGGGTGTGCTGGAGTGGAGGGGACATGGCAGCTGATCTACAGAATTGACAGGAGAGGAAACCACACAGAGTCAGACAGGTTTAGGAGCAGACTGAGAGTGACTGAACATCATGACCTTACACTGGAGCTGAAGAACGTGGTCATGAGTGATGCTGGAGTGTACATCTGTTCTGATCATACAGAATATAAGGAATTTGTTCATCTGGATGTGACTGCAGGCTGCTACAAGAATTTAAGACTGACTCCATCTAACCAGTCAGTCAGCCCCAGAGTGGGAGAGTCTTTTAGTTTCCTTTGCACCCACTGTGATGGTACAGAGCCACCAGCAACTGGCTTTGACTGGAGCCTCAATGGACAGCCCATCAATAGAGGCTCTAGGGAAGTTCTGCTGGGAAAGAAGTATCTGACTATACAGAGAATGGATGAGAGCCATGAGGGCAGAATGACCTGTGGCTCTGGGGGTCAGAGGACAGAGCTGTGCCTGACAGTGGACAACACATCACTGGGGACCACTGCCACACCCCCGCCTGGAGACCCCACACTGAGCCACTCCACTGCTTTTGAATCCTGTCTGCTGGTTCTTCTCTACACAGCAGCTCCCCCTGTCCAGATCAGAGTCACCCTGCTCTACAGCAGCGCTAAAGTCTGCATCCTGGCTGCGATGACCCTTTCTGTGGTGGTATGTGAGATCAAGGCCCGACGTCAAGCGGCTCCCCCTGTCCACATCAGCGTCACCCTGCTCTACACCGGCGCTAAAGTCTGTGTCCTGACTGCGATGATCCTGGCTGTAGTGGTGTGTGAGATCAAGGCCAGAGGACGAGGGAACAGGAAAGGGCACCTCTACACCACACAATTCCCCAGGGAGGTGGATCCTGGGAAGCTCAACACAGACAccagAGGACGGGAAATCAGCTGGGAGTGGGAGCCCAGATACCCCAGGTGTGCTGGAGTGGAGGGGAACTGGCAGCGGATCTACAGCATCGACAGGAGGGGAAACCACACAGTGGAATCACACAGGTTTAGGAGCAGACTGAGAGTCAATAGTTATAATATACTGGTGCTGAAGGACATTGTCATGAGCGACGCTGGGCTGTACAGCTGTTCTGATATTGTTGGGTATAAGGACTACATTAATCTGCATGTGACTCAAGGCTGCTACAAGAACTTAAGACTGACTCCATCTAACCAGTCAGTCAGCCCCAGAGTGGGAGAGTCTTTCAGTGTCCTTTGCTCCCACTGTGACAGTACAGAGCCACCAGCAACTGGCTTTGATTGGAGCCTCAATGGACAGCCCATCAATGGAGACTCTGAGGGATTTATGGTGGGGGATAAGACTCTGACTATACAGAGAGTGGATGAGAGCCATGAGGGCAGAGTGACCTGTGGTTCTGGGGGTCTGAGGGCAGAGCTGTGCCTGACAGTGGACAACACATCACTGGGCACCTCTGCCACACCCCCACCTGGAGACCACACCCCTGCGACCCCCCCACATGGAGACCACACCTCTATCACACCTCCACCTGGAGACCCCACCTCTGCCACACCCCTGAAGGCAGATCAAACTTCTACCACACACCCACCTGGAGACCACACCTCTGCCACACACCCACATGGAGACCACAGCTCTGCCACTCCCCCGCCTGGAGACCAAACTTCTGCCTCACCCTCGCCTGGAGACCCCACCTCTGCCACACCCCTGAAGGCAGATCAAACTTCTACCACACACCCACCTGGAGACCACACCTCTGTCACACCCCCACATGGAGACCAAACTTCTGCCACACCCTCACCTGGAGACCCCATCTCTGCCACACCCCCAAATGGAGACCAAATTTCTCCCCTTGTCCAGATCAATGGCTCCCCTGCCTTCACCCAGCTCTACATAGTGTGCATCCTGGCTGCAATGATCCTGGCTGTGGTGGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136405 lncRNA upstream 389638 2436058 ~ 2518534 (+) False G109011
TU136404 lncRNA upstream 455343 2436058 ~ 2452829 (+) True G109011
TU136402 lncRNA upstream 505021 2402903 ~ 2403151 (+) True G109010
TU136392 lncRNA upstream 551934 2350754 ~ 2356238 (+) True G109004
TU136373 lncRNA upstream 615276 2292697 ~ 2292896 (+) True G108987
TU136687 lncRNA downstream 70295 3004856 ~ 3028646 (+) True G109217
TU136688 lncRNA downstream 82218 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA downstream 131801 3066362 ~ 3069228 (+) True G109218
TU136755 lncRNA downstream 300344 3234905 ~ 3236401 (+) True G109260
TU136762 lncRNA downstream 313308 3247869 ~ 3252080 (+) False AMCG00006366
AMCG00006347 mRNA upstream 25955 2866303 ~ 2882217 (+) True AMCG00006347
AMCG00006346 mRNA upstream 61999 2832505 ~ 2846173 (+) True AMCG00006346
AMCG00006348 mRNA upstream 94683 2812331 ~ 2813489 (+) True AMCG00006348
AMCG00006351 mRNA upstream 96867 2809340 ~ 2811305 (+) True AMCG00006351
AMCG00006350 mRNA upstream 100715 2802070 ~ 2807457 (+) True AMCG00006350
AMCG00006352 mRNA downstream 2382 2936943 ~ 2944472 (+) True AMCG00006352
AMCG00006353 mRNA downstream 20774 2955335 ~ 2960532 (+) True AMCG00006353
AMCG00006359 mRNA downstream 54582 2989143 ~ 3001290 (+) True AMCG00006359
AMCG00006360 mRNA downstream 159521 3094082 ~ 3111575 (+) True AMCG00006360
AMCG00006364 mRNA downstream 216511 3151072 ~ 3177539 (+) True AMCG00006364
TU135896 other upstream 1095497 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 1168905 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1478185 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1622120 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 1917350 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 426793 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 568620 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 635478 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 664680 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 703182 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile