RNA id: AMCG00006360


Basic Information

Item Value
RNA id AMCG00006360
length 1721
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00006360
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3094082 ~ 3111575 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAACTGAAtctgatttcattatttcaggTAAAAACGATCATAAAGATGACAACCATTCAGgTAAAAACGATCNNNNNAATCACCATCTGCAGCCCCTGTTCCATggAGTAAGATTAAATACCCTGCGGTGGGAGGAGGAGTGCTCATACTGGTCTGTGTGGTTGTGCTGATCGTGTGCTACTGCAGGAGGTGCAGAAATAAAGgCTCCATGGACACATCGACAGACTATGCTGTCGTACACGTGCCTCAGATAACAGAAGAAGGGGACCCAGACTACACTGAGATAAAGGACCTCAAACCAGCTGAAGAAGCAGCTGTAGAAGCGAATGCTGAATCTGACTACGCCGTCATCAGTGAAGCAGAAGCCAAGCAAGCCGGCGATCAGGGCTCTGACTACGCTCTGGCCCAGGCCCCGCAGACGGCTAAGGAAGGTCCAGCCTCTGTCCAGGACTCAGATTACTCTTCTGTTCAGCCTCCCAAGGATGTTGAGAAAGAGACAACCGGCAGTCCGAATTCAGACAACTCTGTGGCTCCCGAGACAGCTGGGAAGGGACCTGAGCACAGAGGAGCCGAGACTGTCTAGAGGAACCCACTGAACATTTACACACCCACTGTTACCAgatactgtttgttttttcccggTTAGTTAAAGTATATCATGCTCAAATGTGCAATTCGGGAGCTATTGTATGTAATGTACAGGTGTCACACAGACAGGATGCTTATGCAATAAGATGGTTATTTGACTCTGCTTTCATTATAGTTGTGAAATAGAGGGTTTGACAAGCCTTGTTACATGTTTACACCATGTTATAGTGTAAAACAAGCCACTGGTGAACTTACCAGGGTAAGAGTGCATAAAGGAGGGAAGTAAAGCCTTTGGCCTCAGCCCTTGTTCTCTCCTTCTTCTCAGGGGATTCACACatgatcaaaacattgacctccCTGCTAATCATAAACCTGACAAGCTGTAACCTATCACAGTATACAGTGACGtctacaatacattaaactatttataacTCAAAACATGATAGGGCACAACTTTGAAGGTGATTTGCAGgagggtcaatgttttgatttggtctctAAGACAATCAGGAATGTGCCGCCAGTGCCGAACAAACTAACCCTGTAATTATAATAGTTATATActcctttaattattatttttttgtaaatgcccttacccagggcaacttacagtttactaaagaagcattttaaagctTTACAAATGTTCAGTAATTTgtaagttatatatttatatttttcaatgagttttgtaaaaaatatgtgTGATGTAATCACATCCTACAGAGCCGGAAAGTGGCAACACATGGCAATCTTTGTACATAGAActctattttatatattgaatcTGCTTGATAGATAGAAAGAAAGGTAGAAAGGTAGGGAGGTTGATGAAGAGAAGTCAGTAGGTAGATATAGACagaattcatttaaaaaggcaaactAGCAAGATGGCAAGTTGTTTTCTTGGTGTATGTTGCTGTACATGATGACAGTTTGTGGCTGCTGATGCGTTGTATTGTCGATCGCTGTTGAGTCTTTATTATTTAAGGTAAGCTTGTGTAAAATAAAGTCAATCAGGGAAATGAAAGTGTGTATCAATTGTCCTTCGCTGATGGGGATTGTCACTGGTCTGGCTGTTTTCACACAGCTGGAGTCATTGGCAAACTGGCCACTGGCTCTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136688 lncRNA upstream 24854 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA upstream 24854 3066362 ~ 3069228 (+) True G109218
TU136687 lncRNA upstream 65436 3004856 ~ 3028646 (+) True G109217
TU136405 lncRNA upstream 575548 2436058 ~ 2518534 (+) False G109011
TU136404 lncRNA upstream 641253 2436058 ~ 2452829 (+) True G109011
TU136755 lncRNA downstream 123330 3234905 ~ 3236401 (+) True G109260
TU136762 lncRNA downstream 136294 3247869 ~ 3252080 (+) False AMCG00006366
TU136782 lncRNA downstream 171561 3283136 ~ 3286179 (+) True AMCG00006368
TU136826 lncRNA downstream 228514 3340089 ~ 3393931 (+) True G109301
TU136838 lncRNA downstream 249779 3361354 ~ 3363115 (+) True G109309
AMCG00006359 mRNA upstream 92792 2989143 ~ 3001290 (+) True AMCG00006359
AMCG00006353 mRNA upstream 133550 2955335 ~ 2960532 (+) True AMCG00006353
AMCG00006352 mRNA upstream 149610 2936943 ~ 2944472 (+) True AMCG00006352
AMCG00006358 mRNA upstream 159521 2908172 ~ 2934561 (+) True AMCG00006358
AMCG00006347 mRNA upstream 211865 2866303 ~ 2882217 (+) True AMCG00006347
AMCG00006364 mRNA downstream 39497 3151072 ~ 3177539 (+) True AMCG00006364
AMCG00006367 mRNA downstream 108644 3220219 ~ 3232977 (+) True AMCG00006367
AMCG00006366 mRNA downstream 131362 3242937 ~ 3251497 (+) True AMCG00006366
AMCG00006368 mRNA downstream 163207 3274782 ~ 3285081 (+) False AMCG00006368
AMCG00006370 mRNA downstream 181168 3292743 ~ 3301359 (+) True AMCG00006370
TU135896 other upstream 1281407 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 1354815 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1664095 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1808030 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 2103260 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 249779 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 391606 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 458464 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 487666 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 526168 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile