RNA id: AMCG00006361


Basic Information

Item Value
RNA id AMCG00006361
length 1064
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00006361
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3112543 ~ 3117675 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATCCGACAATTGAACTGTGGCTGCTtgtccgagagagagagagacggcatCATACTCCTGCACTGCAGACAAGACACGTCAGGGGCATGGACGGTCTCCGCAAAGCTCCTGGgtttctcctgctctctctcctcagcCTGGGCACACGCTGGCAGTCAGCTGCCGTGAAATACACCGTGACAGAGGGAGGAGCGGCAGTGCTGGAATGCAAGATCTCGAAGCCCCCATCACACGGCGAGCCAGTCCGGTGGTCATTCAGCAAGACTGGCTCAAAACCGGAGCTTCTACTGACCCGAGATGAGAAGGGAGCTGTCCGTAAGGAGGTCGCTGTTCAAGACAAGAGGGTCAGGCTGCTGCCTGATGACAACAAATTGATGATATCACCTGTGCGGTCGGCAGACTCCGGCCTCTACCTGTGTAACGGTGAACATGCTGCCAATTTAGAGATAAAGGGGAAACAGAAAGACACTAAAGAGAGAAGCACAGTCAAGCCTGCAATGGAGACGACACCTGCAGGAGGCAGAGACAGTGCTGAACACACCACTATTGAGGAGACTTTTACAGGGAAACAAGAAGTCACTACGCAGAGTAGCACAGCCGAGGCGGCAACCGAGATGACAACTGCAGACTGCAGGAACAGCAGGTGCAGTGCGGGCTCCTCTGTCCACAGAGTCCACAGCTCCCTCACAGCCTGCGGCGTGGCTGGAATAATGGCTGCGGTGATTGCAAGGTAGATGAAGGCCAGGCTGAAGACTACATCAGGGCTCTGCAATAACAGAACTCAGGACTCAAAGTTTCTCTAATGAAGGTCTCAATATTAGAGTCAAACCATGATTTGAACTAAACATTTTCTAGATTTAACCATTTGCAAGCTGTgaaatttcaaataaacattttttaaaagctaaacCTTGCGGTTATGAAAGGTTCATTTAcaccaattatgtaaaataagtGCAATAAAATGATTCAGCCAATATCCAGCTTTGAGAAATACTGTACTTGATCAAATACTGGGCCTTCAAATCTATTGTTATACAGGATTTGTTCCAGTGGTAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136638 lncRNA downstream 218009 2892894 ~ 2894534 (-) False AMCG00006354
TU136636 lncRNA downstream 220650 2888486 ~ 2891893 (-) False AMCG00006354
TU136621 lncRNA downstream 280214 2818469 ~ 2832329 (-) True G109163
TU136566 lncRNA downstream 526554 2582619 ~ 2585989 (-) True AMCG00006344
TU136528 lncRNA downstream 714553 2394749 ~ 2397990 (-) True G109099
TU136816 lncRNA upstream 168595 3286270 ~ 3287229 (-) True G109294
TU136854 lncRNA upstream 222443 3340118 ~ 3433270 (-) True G109322
TU136866 lncRNA upstream 249522 3367197 ~ 3369548 (-) True G109334
TU137003 lncRNA upstream 430939 3548614 ~ 3561944 (-) True G109432
TU137017 lncRNA upstream 468921 3586596 ~ 3655123 (-) False G109439
AMCG00006356 mRNA downstream 129736 2974697 ~ 2982807 (-) True AMCG00006356
AMCG00006355 mRNA downstream 142091 2965818 ~ 2970452 (-) True AMCG00006355
AMCG00006357 mRNA downstream 147581 2964315 ~ 2964962 (-) True AMCG00006357
AMCG00006354 mRNA downstream 218031 2888495 ~ 2894512 (-) True AMCG00006354
AMCG00006341 mRNA downstream 453041 2650628 ~ 2659502 (-) True AMCG00006341
AMCG00006363 mRNA upstream 2602 3120277 ~ 3124200 (-) True AMCG00006363
AMCG00006362 mRNA upstream 20232 3137907 ~ 3139535 (-) True AMCG00006362
AMCG00006365 mRNA upstream 61054 3178729 ~ 3203887 (-) True AMCG00006365
AMCG00006372 mRNA upstream 211681 3329356 ~ 3336253 (-) True AMCG00006372
AMCG00006371 mRNA upstream 239120 3356795 ~ 3361837 (-) True AMCG00006371
TU136502 other downstream 782552 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 982288 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1088400 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1230706 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 1387695 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 1047259 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2896429 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3667638 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3960714 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 5604713 8722388 ~ 8724352 (-) True G110507

Expression Profile