RNA id: AMCG00006364


Basic Information

Item Value
RNA id AMCG00006364
length 1647
RNA type mRNA
GC content 0.56
exon number 15
gene id AMCG00006364
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3151072 ~ 3177539 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGAGAGCGCCAGAGACAACAGACACCACAACTGCAGGAAAAGAGCCGAATGAGACAACTGGAGGGACCACTGGAGACCTGCACAGTCAGCTGCATTGTCTCAATATgtcctctgtgctgtgtgtgggtTTGGATGCAGTGCTGAGAGCCGGGCTGTTGtatgAGCATCAAGATATTGAAGAGTCAGATTATGCCACAGCGGAAGAACTGGGAGCTGCCATAACAGGAGCCTTTACTGTTCTCAGTGTCCTGGGCAACATTTACTATGTGGGGCCACCGTTGGCAGGGGCTTGCTGTGCTCTCAGGTGGACTCCCTCTGAGTGTCTCACCAGCCACTCAAGCCCCCGGGCCCAGTCCCCGGAGCCGACGAAGGGAGAGAACTCAGGAGTGAAGGACTTCAAAGCCTCCGAAGACAggtctGATGCTGGGGACAGTGACTGCACAAGTGAACCATTGCAAGAGAAAGTCAGAGACCCAGAGGAGCAGGTGAAGGAGTTTCTGGAGAGCAGCCTCCTACTCTCCCAGATCGCCGAGATGCCGACCAGCTGCACAGTGGGCTCAGTGCAGCTGGATGTGGAGCCGGTTTTACTCTCGTTGAGCCAGGAGTGCCATCACTGGAAGCAGGTGTTCGGCGCAGCCCTCAACGGGAAGGCTTCCGCTGATATGGAGGAAGTGTACGTCTTCATTGACGGCCTGGGCAAGAGGCTGAGCCATCCCGTGGAGCACCTGGAGGACGTGCGGGGGGCCATGGCGGCGCTGAAGGAGATGCGAGAGGACGAGGTTTGTATCGGCATGACCGTGGAGGAGGCCTACGCTCTGCTGAACCGGCACGAGCTGCTGTTCAGAGATGGCAACGCAGAGAGGGTGGACAGCCTGGTCTATGCCTGGACGAAACTCAATTCACAGGTGGGTGCAGACAGGGTCACCAAACAGTCCGTGCATGTGTACGGAAGCGAGGGGGCAGTACAGAGGGAGTGCCgaagacagacagagaccagTTCTTGGGTCATTCATGCCTTCAGTGCCATCAGGAACCACTACATCACTGTGATGCTGATTCTGACGTTCCTCAACCTGCTGGCAATCCCGAAAGGAATGGTGGACAAACTCAGGGAGCATCTGAACAGACACCTGCATCACCTGGGCAAGAAGAGAATCAACAGGCTGGTGGTGAACTACGTGGCACAATTGgcctcctctccctctcaccagCTGGAGCTTGTCAGACGCATCCTGGAGACGCTGTGGGTGAAGTTTAACCTCAGCTCTCAGCTGCTGTGTTTTGCGAATGATGGGTCTGAGCCCGACTGCGGCCGTGTGTACGGCTTCCTGCTGAATTGTTCCCAGGGGCTCTGCTGGATGGtcaggggtcaaaggtcagcctctctctctgtgctggggAGCAAGTGTCTCGGGTCGCCTCTGGACGATTGTCTGCTTGATAGGGTTCAGCAGAGCCTGCAGTCAGCAGTGTCAGTCTACCGAATACTTCAGATAATTTTCGATTCCGTTTCAGAGCTGGACAACAGCAACCCGAACGAGGAGCTGAAGTTCAGCATCGTAAAGAGACTGCCAGAGGGGACGTCCCGAGTGGAGAGCGACAGGTCTTTCTTCCAGTCTGAGTTCAGCCGCTCAGCTACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136688 lncRNA upstream 81844 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA upstream 81844 3066362 ~ 3069228 (+) True G109218
TU136687 lncRNA upstream 122426 3004856 ~ 3028646 (+) True G109217
TU136405 lncRNA upstream 632538 2436058 ~ 2518534 (+) False G109011
TU136404 lncRNA upstream 698243 2436058 ~ 2452829 (+) True G109011
TU136755 lncRNA downstream 57366 3234905 ~ 3236401 (+) True G109260
TU136762 lncRNA downstream 70330 3247869 ~ 3252080 (+) False AMCG00006366
TU136782 lncRNA downstream 105597 3283136 ~ 3286179 (+) True AMCG00006368
TU136826 lncRNA downstream 162550 3340089 ~ 3393931 (+) True G109301
TU136838 lncRNA downstream 183815 3361354 ~ 3363115 (+) True G109309
AMCG00006360 mRNA upstream 39497 3094082 ~ 3111575 (+) True AMCG00006360
AMCG00006359 mRNA upstream 149782 2989143 ~ 3001290 (+) True AMCG00006359
AMCG00006353 mRNA upstream 190540 2955335 ~ 2960532 (+) True AMCG00006353
AMCG00006352 mRNA upstream 206600 2936943 ~ 2944472 (+) True AMCG00006352
AMCG00006358 mRNA upstream 216511 2908172 ~ 2934561 (+) True AMCG00006358
AMCG00006367 mRNA downstream 42680 3220219 ~ 3232977 (+) True AMCG00006367
AMCG00006366 mRNA downstream 65398 3242937 ~ 3251497 (+) True AMCG00006366
AMCG00006368 mRNA downstream 97243 3274782 ~ 3285081 (+) False AMCG00006368
AMCG00006370 mRNA downstream 115204 3292743 ~ 3301359 (+) True AMCG00006370
AMCG00006373 mRNA downstream 165000 3342539 ~ 3349221 (+) True AMCG00006373
TU135896 other upstream 1338397 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 1411805 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1721085 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1865020 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 2160250 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 183815 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 325642 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 392500 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 421702 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 460204 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile