RNA id: AMCG00006365


Basic Information

Item Value
RNA id AMCG00006365
length 2559
RNA type mRNA
GC content 0.59
exon number 17
gene id AMCG00006365
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3178729 ~ 3203887 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCGCACCAATCAGAGTGAGGCAGTCTGTGACGGTGCGTTGTCATGGGAGCCCCTCACGCAGCCGCAGCCGGTCCGAGATTGACGCGAAGCCACCTGCCATGAGCCACAGGGGAGACAGCATCCCTgtcagtgaggaggaggaggaggaggaagaagagagggaagaggaggaggaggaggaggaagaggaagagcgCACTGAGAGGGAGAAGCCCATTGCAATTCCTCTCCATGTGAACCTCCATGAGGAGGGGCCAGCAGACATTTCCTCAAGCCCTGCATTGCAGTGCCTCGATGAGCTGTTCTCTGCGGGAAAGATCTCTGGAAACCGAGAGGCCAAACTGAAGGCCAGCTTCACTCTGCTGCACAACACTTTGAAAAGGCAGCAGAAAGAGCTGCTGCAGGAAGAGCAGTTCCCCGAGGGCCCAGACACCGAGGTGCGGAGCATGAGGGAACAGCTGCTCCGCTTCCTTAATGACCTGCGGGTGGCCGAGGAGAGGGAGTACCAAGAGCTGGAGAAGAAGAGCATAGTGCTGAAGGAGAGCAGTCAGGAGCTGCGCCGAGAGTTTGCCCAGAGGAGGCCGGAGATCAAGGCTCTGCAAGAGGACATGGAGGCCACGCAGAGACACATCCAGCGTGAGCAGCAGGAGCTAGACAAGAAGAAGGAAGTCATCGAGAGCTGCGAGagtgAACTGGTCCGGCTACACACCATTCCCGGCCAGCTGGGGAAGGAGATGGAAGGATTAAACCGTAAGAAGATGGacttggaaaagaaaaaggcgGAGCTGGAGGAGCAGGTGTGTGAGCTGACGGCCGAGCAGAGACGCACGGAGAGCCGGGGCCGGGCactggaggaggagagacaggAGGTGATGAGGGAGctagaggagaggagggggcagCTCAGGAGGGAAGAACAGCACCACAACCAGCTGCTCAAGGAAAAGGAGCTGGCCAAAGAGAAGGAGGCTATCCTGATGGGAGAGAGAGCCGTCTTGGATATTAACCACCGTGACATCGCCCTGGAGAAGAAGAGGCAGCACGATATGCTGTCTCGGAATCTGAAGGAGGAAGAGCGACAGATGCGCAGCCTGAAGAAGGCGGAGCTGCAGCTGAAGCTGGCAAATGACGCCCTGGTGCAGACACAGTTTCTCCACAAGAAGGTCAAGTCGCAGATGGAGGGCTTGCCGAAGGGGGATGGACTTTTAGAGCAGAGACAGGAATTGCAGAAAGAGGTTGAAATCCTTAAACATAACGTGGTACAGGAGCAATCTCTGACGGAGCAGGAGGCCCACATGGTGGAGTACTGCCTGGCGCAGCAGCAGGATCTGGTGCAGGGCACCCAGCGGCACCGCAAGGAGCTCGCCCGCCTCACCTGCCTGACGCAGATCAAAGCCGACGAGAGGGAGCAGAAGTCCAGGGACCTGGTCAAGGTCAAGCAACAGTATGACCGCATCAAGCAAGAGCTGCGGAGTAGAAGCCTGGTGGTACAGGATCATAAGAAGCAATATCACGCAGTTCAATCCAGGTTGAACGCATTTGCAAAGCTCCATGACATCATAAAGGACGAGAGGGACAAATGTGAGAACCTCATTCAGATGGCTTCGCAGAGGACCGGGGAAATGGGGGGGAAATTCAAGATCCTGGAGAACGAGCGTGAGATTTTGGAGACCAGTGCCTTTAATAGGGACAGaagACCGCTTTCCAAGTGCCAGGACAGATGTCTGGAGCTGGAGAAGGCCCTGGAGGACCCTAGCAGGGAGAAGCACATCAGACTGCTCGAGGGAGCCGACCCCAAACGCAGCGAGCTCCTTGAAAAGATCAAACGGGTACCTGGGGACCACACGCCCTGTGCCCTCAGCGCGCCTGTGAGGAACCACCTTGTGTCAACgctctctctgctctgctctctcccCCACCAGCTGGAGCTGCATCTGGCAGAGCGCGAGCAACAGCTGCTGGAGAGGAATCTGGTGTATGAGCAGGTGGCCCGGCTAGCCCAGCGCCTCAGCATCAAGGAGGAGGATAGCCGGCCGGACGCGCTGGCTCTGGCCAAGAAGGTCGGCCGTGGATTCCCAGAGGACCAGAATATCAATATGGCGTGCGATTTTAAATCTGTTGCACAGGTGAACAGGCTGAAGGGACGCATCAGGGACACTACGCGGCGGATGATGGCGCTCATGGCGGAGCTGTCCATGCAGGAGACCCACAGCCTGGCGCTGCAGAAGGAGGTGCAGGACAAGGAGGTACTACTGGAGGCCTGCCACCGGAGATTGGAGCAGGGCCTGCCACCCAGTGACGACATGGACATGAAGCAGGAGCAGCGGAGGGCCAAGTGCAAGGAGAGAGCCAGGGTGGCCGAGGAGGAGGAATGGCACCAGCTGCCCAGTGGGGTGTACACCAGCGCAGAGGCCCGGCCCAATGCCTACATCCCCCAGGATGACCCCCTGCCCGTGCCCCGGCCCTACGGAGCCCTGGCCCCCTTCAAGCCCAGCAAGCCCGGCACGAACCTCAGACACATCCGCAAGCCCATGCCCAAGCCCATAGAGATATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136638 lncRNA downstream 284195 2892894 ~ 2894534 (-) False AMCG00006354
TU136636 lncRNA downstream 286836 2888486 ~ 2891893 (-) False AMCG00006354
TU136621 lncRNA downstream 346400 2818469 ~ 2832329 (-) True G109163
TU136566 lncRNA downstream 592740 2582619 ~ 2585989 (-) True AMCG00006344
TU136528 lncRNA downstream 780739 2394749 ~ 2397990 (-) True G109099
TU136816 lncRNA upstream 82383 3286270 ~ 3287229 (-) True G109294
TU136854 lncRNA upstream 136231 3340118 ~ 3433270 (-) True G109322
TU136866 lncRNA upstream 163310 3367197 ~ 3369548 (-) True G109334
TU137003 lncRNA upstream 344727 3548614 ~ 3561944 (-) True G109432
TU137017 lncRNA upstream 382709 3586596 ~ 3655123 (-) False G109439
AMCG00006362 mRNA downstream 39194 3137907 ~ 3139535 (-) True AMCG00006362
AMCG00006363 mRNA downstream 54529 3120277 ~ 3124200 (-) True AMCG00006363
AMCG00006361 mRNA downstream 61054 3112543 ~ 3117675 (-) True AMCG00006361
AMCG00006356 mRNA downstream 195922 2974697 ~ 2982807 (-) True AMCG00006356
AMCG00006355 mRNA downstream 208277 2965818 ~ 2970452 (-) True AMCG00006355
AMCG00006372 mRNA upstream 125469 3329356 ~ 3336253 (-) True AMCG00006372
AMCG00006371 mRNA upstream 152908 3356795 ~ 3361837 (-) True AMCG00006371
AMCG00006376 mRNA upstream 235624 3439511 ~ 3452179 (-) True AMCG00006376
AMCG00006377 mRNA upstream 272104 3475991 ~ 3479508 (-) True AMCG00006377
AMCG00006380 mRNA upstream 302424 3506311 ~ 3515208 (-) True AMCG00006380
TU136502 other downstream 848738 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1048474 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1154586 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1296892 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 1453881 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 961047 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2810217 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3581426 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3874502 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 5518501 8722388 ~ 8724352 (-) True G110507

Expression Profile