RNA id: AMCG00006368



Basic Information


Item Value
RNA id AMCG00006368
length 675
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00006368
representative False

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3274782 ~ 3286179 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTAACTCAGAgggtgctgggaaggagagagaagttccggttcaaaggtgggggtaaccagaaggtgaggtgggccttccggtctgtgAACAGATTCTCACTGCTCAGTGACGCCTCCCTTCTGATCACTGCTGTTCAGCCTGGAGACGCTAGACAGTACAGCTGTAACCAGAAGCATGTGGCAGATCTGGAGGTGGTGAGAGGTCCAGCTCACTACACTGTGTCGGAGGGGAGAACAGTACTGCTGCCCTGTAATATCTCTCAGCCTCCTATACCCAGTGAGAGAGTCCAGTGGACATTTAGTAACAGTGGCTCCAACTCTGAGACAATCCTGACCAGAGACGAGAAGGGAACTGAAAAGAAACCTGGTCAAGATCACAGGTTCAGCCTATTGTTCCCTCCTACTGACCTCACCCTGGTGATCAGAGCTGTCCAGCCCGCAGACTCTGGGCAGTACCTGTGTAACAGTGAACATGCTGCCCATTTACTGGTGATAAAGGGTCCTGCTGCAGGACAGGACACCCCAGGACAGGCgaatgaggaggaggagaaggaggatgAGATCCATTATGCCTCCCTGGGTCACCAGAACCGGAAGACAGACCGACCCCGAGAGGAGCCCAGAGACTCCAGTGTGGTGTACTCCACTGTGGCCCTCAAAAACACAGCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU136762 lncRNA upstream 22702 3247869 ~ 3252080 (+) False AMCG00006366
TU136755 lncRNA upstream 38381 3234905 ~ 3236401 (+) True G109260
TU136688 lncRNA upstream 205554 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA upstream 205554 3066362 ~ 3069228 (+) True G109218
TU136687 lncRNA upstream 246136 3004856 ~ 3028646 (+) True G109217
TU136826 lncRNA downstream 55008 3340089 ~ 3393931 (+) True G109301
TU136838 lncRNA downstream 76273 3361354 ~ 3363115 (+) True G109309
TU136937 lncRNA downstream 263533 3548614 ~ 3548988 (+) True G109389
TU136956 lncRNA downstream 289629 3574710 ~ 3576156 (+) False AMCG00006379
TU136939 lncRNA downstream 333165 3618246 ~ 3621796 (+) False AMCG00006379
AMCG00006366 mRNA upstream 23285 3242937 ~ 3251497 (+) True AMCG00006366
AMCG00006367 mRNA upstream 41805 3220219 ~ 3232977 (+) True AMCG00006367
AMCG00006364 mRNA upstream 97243 3151072 ~ 3177539 (+) True AMCG00006364
AMCG00006360 mRNA upstream 163207 3094082 ~ 3111575 (+) True AMCG00006360
AMCG00006359 mRNA upstream 273492 2989143 ~ 3001290 (+) True AMCG00006359
AMCG00006370 mRNA downstream 7662 3292743 ~ 3301359 (+) True AMCG00006370
AMCG00006373 mRNA downstream 57458 3342539 ~ 3349221 (+) True AMCG00006373
AMCG00006369 mRNA downstream 67124 3352205 ~ 3354806 (+) True AMCG00006369
AMCG00006375 mRNA downstream 134234 3419315 ~ 3421518 (+) True AMCG00006375
AMCG00006374 mRNA downstream 141344 3426425 ~ 3428561 (+) True AMCG00006374
TU135896 other upstream 1462107 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 1535515 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1844795 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1988730 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 2283960 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 76273 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 218100 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 284958 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 314160 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 352662 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile