RNA id: AMCG00006370



Basic Information


Item Value
RNA id AMCG00006370
length 1065
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00006370
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3292743 ~ 3301359 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACAGAGCTGAGCCCAGAGAGAAGAGACCGTGCGTCTGTGTCTCCAGATACACCTGCTGCCATGGAGGGGAAGGGGTGGCTCGTCCTCCTGCTGACAGAGACAGCCTGGATCGGGCTGCGCCGAGACTGCAGAGAGAACTGGCAGTGGTCTGACGGAGAAGAGCTGAGATTCACTCACTGGAAGAGTCACCTGCCCTGCGCTGCTCTCAACACAGAGGGAAGCTGGGAGAACAGAAGCTGCCAGGAGACAAACTACTTCATCTGTGAGACACAAGAGAAACAAAAGACCAGTAAGACGTACATCCTTGTGATGCAGGACCAGAGCTTCAATGCAGCTCAGAGACACTGCAGAGAGATGTGCACAGAGCTGCTCAGAATAGAGGCAGATCAGGAGTATAAAGATGTAAAGCAGGCAGCACAGAATCACACTGTGTGGATCGCTCTGTTCCAGGACGGCTGGCACTGGTCTGATGGGAATCACTCTTGGTATCTGCAGGGTGTCAAGGTGTGGCTGGGTCTGTACAACAAGCCGTGGAAGTGGTCAGCCCAGGGGACGGCTCACTTCAGGAACTGGGCGGAAGGGAAGCCAGGTGGAGAGGAGTGTGTGGGAGTGATGGTGAATGGGACACTGAGAGGACAATGGACCGATGCCAACTGCACTGAGGAAAGACCGTTCATATGTCACTATGACACCAGAGAGCTGATTCTGGTCAATGAGTCAAAGACTTGGTTTGATGCCTTGACCCACTGCCAGTCTAACCAGTCTGAGCTGGCTGAAATCCGCTCCTTCAAAGAGCAGAGGTATGCTGTGGAAGTGGCCAGCAGTAGCCAGGACTCCCAGGTCTGGCTGGGCCTGAGACAGAGCCGGATCTGGGGATTCTGGTTCTGGGTGAGCGGAGAGACTCTGACCTATGGGAACTGGAGTGGTGGGGAGGCACCCCAAGACGTACAGGACAAGCACTGTGCTGCCCTGGATACAGAGACAGGCTCCTGGAGTGACCGAGACTGTGAGGACAAGCTCAGGTTCATCTGTGAGAGAGGTACTGAACTGGCTCCTCAGGGTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU136782 lncRNA upstream 6564 3283136 ~ 3286179 (+) True AMCG00006368
TU136762 lncRNA upstream 40663 3247869 ~ 3252080 (+) False AMCG00006366
TU136755 lncRNA upstream 56342 3234905 ~ 3236401 (+) True G109260
TU136688 lncRNA upstream 223515 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA upstream 223515 3066362 ~ 3069228 (+) True G109218
TU136826 lncRNA downstream 38730 3340089 ~ 3393931 (+) True G109301
TU136838 lncRNA downstream 59995 3361354 ~ 3363115 (+) True G109309
TU136937 lncRNA downstream 247255 3548614 ~ 3548988 (+) True G109389
TU136956 lncRNA downstream 273351 3574710 ~ 3576156 (+) False AMCG00006379
TU136939 lncRNA downstream 316887 3618246 ~ 3621796 (+) False AMCG00006379
AMCG00006368 mRNA upstream 7662 3274782 ~ 3285081 (+) False AMCG00006368
AMCG00006366 mRNA upstream 41246 3242937 ~ 3251497 (+) True AMCG00006366
AMCG00006367 mRNA upstream 59766 3220219 ~ 3232977 (+) True AMCG00006367
AMCG00006364 mRNA upstream 115204 3151072 ~ 3177539 (+) True AMCG00006364
AMCG00006360 mRNA upstream 181168 3094082 ~ 3111575 (+) True AMCG00006360
AMCG00006373 mRNA downstream 41180 3342539 ~ 3349221 (+) True AMCG00006373
AMCG00006369 mRNA downstream 50846 3352205 ~ 3354806 (+) True AMCG00006369
AMCG00006375 mRNA downstream 117956 3419315 ~ 3421518 (+) True AMCG00006375
AMCG00006374 mRNA downstream 125066 3426425 ~ 3428561 (+) True AMCG00006374
AMCG00006378 mRNA downstream 240359 3541718 ~ 3552354 (+) True AMCG00006378
TU135896 other upstream 1480068 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 1553476 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1862756 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 2006691 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 2301921 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 59995 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 201822 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 268680 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 297882 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 336384 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile