RNA id: AMCG00006371


Basic Information

Item Value
RNA id AMCG00006371
length 1182
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00006371
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3356795 ~ 3361837 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCGCAGTTTCCGAGTACCCTGCCCTGTCTGCTTTCCGTGGAACACATGACCAGAGGAGCCATTGGTCGTGTGGTGGTGTATTTAATGCCCTCCTTCCCCAGGTGAACCCCCTGGTGTTTGATGAGCAGCTGCTGTGGGTGAGTGGGGGTGCAGGCTCTGTGAACACCTACCGCATCCCACTGGTCACCTTCACCCAGCGGGGCAGCCTGCTGGCCTTCTCTGAGGCCCGCAAGAGCTCCTCCAGCGACATTGGGGCCAAGTTCATCGCGGTGCGGCGCTCCACAGATGGGGGCTTGGTGTGGAGCCCCACCTCGTTCATCGTGGACGATGGCTCCCTGGCGGACGGCCTGAACCTGGGCTCGGTGGTGGTGGACGAGGAGACTGGTGTGGTGTTCCTGCTCTACTCGCTCTGCTTCCACCGTGCCCAGTGCGCCCAGCCCAGCACCATGCTCGTCTACAGCACCGATGACGGCCTGAGCTGGAGCCACCCGAGGAACCTGTCCTCTGAGCTGGGGGCCAAGGCCTTTGCCCCAGGGCCAGGCTATGGCATCCAGAAGCGCTTCCGTCCGGCTCGGGGCCGCCTCATCGTGTGCGGTCATGGGACCATCCAGGGCGACGGAGTGTTCTGTGTGCTGAGCGACGACCACGGCCGCACCTGGAGGAACGGCGCAGCACTCAAGAGCATCCCTTACAACCAGCCCAAGAAACCCGGCGACTTCAACCCAGATGAGTGCCAGCCAGTGGAGATGCCCGACGGTTCGGTGGTGATCAATGCCCGGAACCAGAACAGCTACCATTGCCGCTGCCGGCTGGTGGTGCGCAGCGACGACGGGTGCGAGACGCTGCCGCTGGACACGCTGCGATTCGACGAGACCCTCATCGACCCCGAGGTGGCGGCAGGGGCGCTGGTCAAGGAGGGGGTGCTGTTCTTCACCAACCCTGCCGACACGCACAAGAGGATCAACCTCACCCTGCGCTGGTCCTTCACGAACGGCTCGTCCTGGGAGTCGGCCCTGGTGAAGCTGTGGACAGGCCCCAGCGGCTACTCCTCCATGACCGCGCTGAGGGGCAACAAGGTGGAGGACCGCAAATACATCTTTGTGATCTACGAGAAGGGCCACCAGGACCCCTACGAGACTATCTCCATTGCCAAGATCCACCTGTTTGGGGGGCTGTAG

Function

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K01186 NEU1; sialidase-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136816 lncRNA downstream 69566 3286270 ~ 3287229 (-) True G109294
TU136638 lncRNA downstream 462261 2892894 ~ 2894534 (-) False AMCG00006354
TU136636 lncRNA downstream 464902 2888486 ~ 2891893 (-) False AMCG00006354
TU136621 lncRNA downstream 524466 2818469 ~ 2832329 (-) True G109163
TU136566 lncRNA downstream 770806 2582619 ~ 2585989 (-) True AMCG00006344
TU136866 lncRNA upstream 5360 3367197 ~ 3369548 (-) True G109334
TU137003 lncRNA upstream 186777 3548614 ~ 3561944 (-) True G109432
TU137017 lncRNA upstream 224759 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA upstream 224759 3586596 ~ 3655123 (-) True G109439
TU137050 lncRNA upstream 337048 3698885 ~ 3714779 (-) False AMCG00006390
AMCG00006372 mRNA downstream 20542 3329356 ~ 3336253 (-) True AMCG00006372
AMCG00006365 mRNA downstream 152908 3178729 ~ 3203887 (-) True AMCG00006365
AMCG00006362 mRNA downstream 217260 3137907 ~ 3139535 (-) True AMCG00006362
AMCG00006363 mRNA downstream 232595 3120277 ~ 3124200 (-) True AMCG00006363
AMCG00006361 mRNA downstream 239120 3112543 ~ 3117675 (-) True AMCG00006361
AMCG00006376 mRNA upstream 77674 3439511 ~ 3452179 (-) True AMCG00006376
AMCG00006377 mRNA upstream 114154 3475991 ~ 3479508 (-) True AMCG00006377
AMCG00006380 mRNA upstream 144474 3506311 ~ 3515208 (-) True AMCG00006380
AMCG00006381 mRNA upstream 153871 3515708 ~ 3524019 (-) True AMCG00006381
AMCG00006382 mRNA upstream 202392 3564229 ~ 3565417 (-) True AMCG00006382
TU136502 other downstream 1026804 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1226540 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1332652 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1474958 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 1631947 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 803097 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2652267 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3423476 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3716552 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 5360551 8722388 ~ 8724352 (-) True G110507

Expression Profile