RNA id: TU136939


Basic Information

Item Value
RNA id TU136939
length 386
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id AMCG00006379
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3570039 ~ 3621796 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTAACTGCTGTTCAGAAGCAACGAGTAGAGAATGTCTCACAGGAAAACACTGACCCGAAAACCTTATTCAATGTGAAGAATTTAAATCCGTTTATTTTTCCAACAGCGGCGTCGCCAGACATTTTTGCTGTGGCTGCGGCCCCGAACATTTTCAGTGGAGCCCACAATATAATTTGACCGTTAGCCCCCCGTCTTACTGGAGGAAACAActtcagcccccctaaaaccAGCagtctagcgacgcccctgaTCTGAATTGAGACAGTCGTGTCCAGATGATTCAGGAACTCAAGCACCgagaagcaagatcagacgTTTgtcgtttattcttttaaatgtttcatttactatttgtgaataaaatgtgtgcatattattccttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136956 lncRNA upstream 42090 3574710 ~ 3576156 (+) False AMCG00006379
TU136937 lncRNA upstream 69258 3548614 ~ 3548988 (+) True G109389
TU136826 lncRNA upstream 224315 3340089 ~ 3393931 (+) True G109301
TU136838 lncRNA upstream 255131 3361354 ~ 3363115 (+) True G109309
TU136782 lncRNA upstream 332067 3283136 ~ 3286179 (+) True AMCG00006368
TU136971 lncRNA downstream 77312 3699108 ~ 3714779 (+) True G109405
TU136954 lncRNA downstream 100723 3722519 ~ 3755041 (+) True G109392
TU136981 lncRNA downstream 108091 3729887 ~ 3730840 (+) True G109412
TU136961 lncRNA downstream 150753 3772549 ~ 3774544 (+) True G109396
TU137110 lncRNA downstream 242689 3864485 ~ 3864732 (+) False AMCG00006393
AMCG00006385 mRNA upstream 5488 3599253 ~ 3612758 (+) True AMCG00006385
AMCG00006383 mRNA upstream 21393 3585455 ~ 3596853 (+) True AMCG00006383
AMCG00006379 mRNA upstream 42918 3572097 ~ 3575328 (+) True AMCG00006379
AMCG00006378 mRNA upstream 65892 3541718 ~ 3552354 (+) True AMCG00006378
AMCG00006374 mRNA upstream 189685 3426425 ~ 3428561 (+) True AMCG00006374
AMCG00006384 mRNA downstream 2151 3623947 ~ 3632121 (+) True AMCG00006384
AMCG00006387 mRNA downstream 16366 3638162 ~ 3648911 (+) True AMCG00006387
AMCG00006386 mRNA downstream 31443 3653239 ~ 3668931 (+) True AMCG00006386
AMCG00006389 mRNA downstream 127207 3749003 ~ 3763628 (+) True AMCG00006389
AMCG00006392 mRNA downstream 192817 3814613 ~ 3819824 (+) True AMCG00006392
TU136955 other upstream 18549 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 44537 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 111567 3503181 ~ 3506679 (+) True G109362
TU136837 other upstream 252681 3361354 ~ 3365565 (+) False G109309
TU135896 other upstream 1805571 1808557 ~ 1812675 (+) False G108626
TU136960 other downstream 15947 3637743 ~ 3640661 (+) False AMCG00006387
TU137096 other downstream 237477 3859273 ~ 3863270 (+) True AMCG00006393
TU137156 other downstream 341801 3963597 ~ 3963996 (+) True G109538
TU137199 other downstream 531020 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 537727 4159523 ~ 4161973 (+) False AMCG00006413

Expression Profile