RNA id: AMCG00006384



Basic Information


Item Value
RNA id AMCG00006384
length 768
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00006384
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3623947 ~ 3632121 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCCTCAGCTtctgtctcagtgtcagtgAGAGTCGGGGACTCTGTCACTCTGCCCTGTGATGGATCAGCCTGCAGAGGGACTCCTGTAGAGAAGATCTACATTAAATGGGAGACAATAACACATCCCGTCTATGAGTTTGTCTATGGAAAGTCCTATCCCAGCTCTGGGTTTGAGAACAGGACTGAGGTTCCCCTGGAGAGGATCAGACAGGGGGACTTCTCTCTGAACCTCCAGCACACACTGTTCACTGATGGAGAGATATACAAGTGTTTCTGTGAGGGAGATGGAAACCGGGACATTCTTCTTGGAAATGTTAGTCTCACTGTCACAGCTCACAGAGACGCCCTCACCCTGCCGTCTGGAGCCTCGCTGTCTCTCCCGCTCTACTCTCCTGGGCCGGTGGAGGTGCTGTTCGCTGCTGCAGGAGAGGGAgcctctgtctcagtgtgcACTGTGGAGTGGGGTGCAGCGAGCCGCCCTGGCCCCGGGTACGAGCAGAGAGTGTCAGTGCAGAGCGGCTCTCTGACCCTGCGCTCACTCACAGCAGCTGACCAGGGCCAGTACACAGTGAGGGACTCCAGCACCGGCCGCACCGTCAGCaccgtctctgtctctgtcactgGAGAAAAGTCAGTGGaggtgctgtttgctgctgcaggagagggAGCCTGTCTCAGTGTGCGCTGTGGAGAGGGGCGCAGTGAGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGATGCTGCGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU136939 lncRNA upstream 2151 3618246 ~ 3621796 (+) False AMCG00006379
TU136956 lncRNA upstream 47791 3574710 ~ 3576156 (+) False AMCG00006379
TU136937 lncRNA upstream 74959 3548614 ~ 3548988 (+) True G109389
TU136826 lncRNA upstream 230016 3340089 ~ 3393931 (+) True G109301
TU136838 lncRNA upstream 260832 3361354 ~ 3363115 (+) True G109309
TU136971 lncRNA downstream 66987 3699108 ~ 3714779 (+) True G109405
TU136954 lncRNA downstream 90398 3722519 ~ 3755041 (+) True G109392
TU136981 lncRNA downstream 97766 3729887 ~ 3730840 (+) True G109412
TU136961 lncRNA downstream 140428 3772549 ~ 3774544 (+) True G109396
TU137110 lncRNA downstream 232364 3864485 ~ 3864732 (+) False AMCG00006393
AMCG00006385 mRNA upstream 11189 3599253 ~ 3612758 (+) True AMCG00006385
AMCG00006383 mRNA upstream 27094 3585455 ~ 3596853 (+) True AMCG00006383
AMCG00006379 mRNA upstream 48619 3572097 ~ 3575328 (+) True AMCG00006379
AMCG00006378 mRNA upstream 71593 3541718 ~ 3552354 (+) True AMCG00006378
AMCG00006374 mRNA upstream 195386 3426425 ~ 3428561 (+) True AMCG00006374
AMCG00006387 mRNA downstream 6041 3638162 ~ 3648911 (+) True AMCG00006387
AMCG00006386 mRNA downstream 21118 3653239 ~ 3668931 (+) True AMCG00006386
AMCG00006389 mRNA downstream 116882 3749003 ~ 3763628 (+) True AMCG00006389
AMCG00006392 mRNA downstream 182492 3814613 ~ 3819824 (+) True AMCG00006392
AMCG00006396 mRNA downstream 191450 3823571 ~ 3824069 (+) True AMCG00006396
TU136955 other upstream 24250 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 50238 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 117268 3503181 ~ 3506679 (+) True G109362
TU136837 other upstream 258382 3361354 ~ 3365565 (+) False G109309
TU135896 other upstream 1811272 1808557 ~ 1812675 (+) False G108626
TU136960 other downstream 5622 3637743 ~ 3640661 (+) False AMCG00006387
TU137096 other downstream 227152 3859273 ~ 3863270 (+) True AMCG00006393
TU137156 other downstream 331476 3963597 ~ 3963996 (+) True G109538
TU137199 other downstream 520695 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 527402 4159523 ~ 4161973 (+) False AMCG00006413

Expression Profile