RNA id: AMCG00006385



Basic Information


Item Value
RNA id AMCG00006385
length 594
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00006385
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3599241 ~ 3612758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGATCTGCTGGATTATTCTGGCTGTGACTGTCACTGCAGATCCTGTCTCAGTGTCAGTGAGAGTCGGGGACTCTGTCACTCTGCCCTGTGATGGATCAGCCTGCAGAGGGACTCCTATAGAGCAGCTCTACATTGAGTGGCAGACAGTGGATCAGGATGTCTATGTGTTCAGGAGAGGCACAGTCTACCCCGGTCCTGGGTTTGAGAACAGGACTGAGGTTCCCCTGGAGAGGATCAGACAGGGGGACTTCTCTCTGACCCTCCAGCACACACTGCTCTCTGATGGAGAGATGTATGAGTGTttctgtgagggagagagaaaacaggatGTTTTTCTTGGAAATGTTCGTCTTAACATCACAGTAGAAGAGCCCAGTGACCCTCCCGTCTCTCCCCCTGCCCCCTGTGTGCTGAGCTGGGCGCtgctgggctgtgtgtctgcaggctgCCTCCTGCTCTCCGGCTGTCTCTGCTGTCTCTGGAGCAGGAGAGgtGGTGTTCAGTGTGTCGGGGCGCAGAGGAGTCCAGGGCAGAGCAGGAGTGAAGGAGCAGCGCAGGTATTGTGTACAGTCCTGATGGACACACTGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU136956 lncRNA upstream 23097 3574710 ~ 3576156 (+) False AMCG00006379
TU136937 lncRNA upstream 50265 3548614 ~ 3548988 (+) True G109389
TU136826 lncRNA upstream 205322 3340089 ~ 3393931 (+) True G109301
TU136838 lncRNA upstream 236138 3361354 ~ 3363115 (+) True G109309
TU136782 lncRNA upstream 313074 3283136 ~ 3286179 (+) True AMCG00006368
TU136939 lncRNA downstream 5488 3618246 ~ 3621796 (+) False AMCG00006379
TU136971 lncRNA downstream 86350 3699108 ~ 3714779 (+) True G109405
TU136954 lncRNA downstream 109761 3722519 ~ 3755041 (+) True G109392
TU136981 lncRNA downstream 117129 3729887 ~ 3730840 (+) True G109412
TU136961 lncRNA downstream 159791 3772549 ~ 3774544 (+) True G109396
AMCG00006383 mRNA upstream 2400 3585455 ~ 3596853 (+) True AMCG00006383
AMCG00006379 mRNA upstream 23925 3572097 ~ 3575328 (+) True AMCG00006379
AMCG00006378 mRNA upstream 46899 3541718 ~ 3552354 (+) True AMCG00006378
AMCG00006374 mRNA upstream 170692 3426425 ~ 3428561 (+) True AMCG00006374
AMCG00006375 mRNA upstream 177735 3419315 ~ 3421518 (+) True AMCG00006375
AMCG00006384 mRNA downstream 11189 3623947 ~ 3632121 (+) True AMCG00006384
AMCG00006387 mRNA downstream 25404 3638162 ~ 3648911 (+) True AMCG00006387
AMCG00006386 mRNA downstream 40481 3653239 ~ 3668931 (+) True AMCG00006386
AMCG00006389 mRNA downstream 136245 3749003 ~ 3763628 (+) True AMCG00006389
AMCG00006392 mRNA downstream 201855 3814613 ~ 3819824 (+) True AMCG00006392
TU136948 other upstream 25544 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 92574 3503181 ~ 3506679 (+) True G109362
TU136837 other upstream 233688 3361354 ~ 3365565 (+) False G109309
TU135896 other upstream 1786578 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 1859986 1735932 ~ 1739267 (+) True AMCG00006294
TU136960 other downstream 24985 3637743 ~ 3640661 (+) False AMCG00006387
TU137096 other downstream 246515 3859273 ~ 3863270 (+) True AMCG00006393
TU137156 other downstream 350839 3963597 ~ 3963996 (+) True G109538
TU137199 other downstream 540058 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 546765 4159523 ~ 4161973 (+) False AMCG00006413

Expression Profile