RNA id: AMCG00006386


Basic Information

Item Value
RNA id AMCG00006386
length 1557
RNA type mRNA
GC content 0.59
exon number 9
gene id AMCG00006386
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3653239 ~ 3668931 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTTCCTCCGGAGCTCTCGccggtgctgtgctgtgtctgttcCTGATCGGCAACTTCACAGACGTGTCCTCAGCTCCCGTCTCAGTGTCCGTGAGATTTGGGGAGTCTGTGACTCTGCCCTGTGATGGATCAGCCTACAGAGAGACTCCTGAACAGCAGCTGTACATTAAATGGGAGACGATAACCCATCCAGTCTATGAGTTTGTCTATGGAAAGTCCTATCCCAGCTCTGGGTTTGAGAACAGGACTGAGGTTCCCCTGGAGAGGATCAGACAGGGGGACTTCTCTCTGACCCTCCAGCACGCCTCCTTCTCGGACGCAGGGATCTTTGACTGCTTGTATGAGTGGAGAGGGAACCGGGGAGAATTCCTTGGCAATGTGGAGCTCTCTGTGCAGGGCCGTGAGGAGAGCAGCTCTGTCTCCTATGGGCAGCCCCTGAGCCTCCGTCTGTACAGCAGGGCAGCTGTGACAGTGCGGTTTAACCCTGCGGGCACTGGAGCCTCTCTCCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGCCCCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCAGCACTGACCTTCACTGACCAGGGCACCTACACAGTGCTGGACTCCCAGAGCAGGACCATCAGCACTGTGGCCGTCACTGTGACAGCTCAGAGAGACGCCCTCACCCTGCCGTCTGGAGCCTCGCTGTCTCTCCCGCTCTACTCTCCTGGGCCGGTGGAGGTGCTGTTCGCTGCTGCAGGAGAGGGAgcctgtgtctcagtgtgcaCTGTGGAGTGGGGTGCAGCGAGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGACCCTGCGCTCACTTACAGCAGCTGACCAGGGAAACTACACAGTGAGGGAGTCTGGGAACAACCGCACCATCAGCaccgtctctgtgtctgtctccctcACATCTGAAGACTCGGCTCCTCCTCTCTGGGTCTGgagtgtttctgtctctgtgctggGGGTGTTACTGTGCCTCGGGGTCTCTGTGTATGTCTGGCGCAGCCTGAGGCTGAAGAGGAGACCACAAAAACCGAGGACTACTCTTGATTCGCTACTGCCCGTAACCAACCCTCGCTTCTCTGCCACACGGACCTCCACCCCTGATTCCTTCAGTCTGAGGGTGGAGAACATCAGCGACACGGACCTGGCGCTGTACTACTGCgcacagagaggagagatgcGGTTTGGAAATGCGACCAGACTCGTCTATGCAGATCAGCATGAACCGCCCACCTCACACTCTCCcatttcttctccctctccctcttcatcTCCAACACCCCTCCCGtcctgctcctcctctccctctccccctgccCCCTGTGTGCTGAACTGGGCACtgctgggctgtgtgtctgcaggctgCCTCCTGCTCTCCGGCTGTCTCTGCTGCCTCTGGAGCAGGAGAGTTGTGTTTTATCCAGAATTGTGGTGTTCAGTGTGTCGGGGCGCAGAGGAGTCCAGGGCAGAGCAGGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136939 lncRNA upstream 31443 3618246 ~ 3621796 (+) False AMCG00006379
TU136956 lncRNA upstream 77083 3574710 ~ 3576156 (+) False AMCG00006379
TU136937 lncRNA upstream 104251 3548614 ~ 3548988 (+) True G109389
TU136826 lncRNA upstream 259308 3340089 ~ 3393931 (+) True G109301
TU136971 lncRNA downstream 30177 3699108 ~ 3714779 (+) True G109405
TU136954 lncRNA downstream 53588 3722519 ~ 3755041 (+) True G109392
TU136981 lncRNA downstream 60956 3729887 ~ 3730840 (+) True G109412
TU136961 lncRNA downstream 103618 3772549 ~ 3774544 (+) True G109396
TU137110 lncRNA downstream 195554 3864485 ~ 3864732 (+) False AMCG00006393
AMCG00006387 mRNA upstream 4328 3638162 ~ 3648911 (+) True AMCG00006387
AMCG00006384 mRNA upstream 21118 3623947 ~ 3632121 (+) True AMCG00006384
AMCG00006385 mRNA upstream 40481 3599253 ~ 3612758 (+) True AMCG00006385
AMCG00006383 mRNA upstream 56386 3585455 ~ 3596853 (+) True AMCG00006383
AMCG00006379 mRNA upstream 77911 3572097 ~ 3575328 (+) True AMCG00006379
AMCG00006389 mRNA downstream 80072 3749003 ~ 3763628 (+) True AMCG00006389
AMCG00006392 mRNA downstream 145682 3814613 ~ 3819824 (+) True AMCG00006392
AMCG00006396 mRNA downstream 154640 3823571 ~ 3824069 (+) True AMCG00006396
AMCG00006394 mRNA downstream 156637 3825568 ~ 3826749 (+) True AMCG00006394
AMCG00006395 mRNA downstream 163330 3832261 ~ 3839998 (+) True AMCG00006395
TU136960 other upstream 12578 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 53542 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 79530 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 146560 3503181 ~ 3506679 (+) True G109362
TU136837 other upstream 287674 3361354 ~ 3365565 (+) False G109309
TU137096 other downstream 190342 3859273 ~ 3863270 (+) True AMCG00006393
TU137156 other downstream 294666 3963597 ~ 3963996 (+) True G109538
TU137199 other downstream 483885 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 490592 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 808003 4476934 ~ 4477570 (+) True G109714

Expression Profile