RNA id: AMCG00006388


Basic Information

Item Value
RNA id AMCG00006388
length 1789
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00006388
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3674830 ~ 3678417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctttcctcagTCTCCTCAGCTCCTGTCTCAGTGTCAGTGGGAGTCGGGGACTCTGTCACTCTGCCCTGTGATGGATCAGCCTGCAGAGGGACTCCTGTAGAGCAGCTCTACATTAAATGGGATGGATGACCAGCAAGCAAAAGTAAACTTTAGCCCAGCCCTGGGTTTGAGAACAGAGCAGAGGTTCCCCTGGAGAGGATCAGACTTCTGCCTGACTCTCCAGCTCCCCTCCTTCTCTGATGTAGACATGAGAGGGTCTGGGGGAGAGGGATGGGGCGCCGGCTGTGGTCACTGGGGCTGGCAGAGCTCTGGGGTCTCTGGCTCTGGAGGGGCGGCAGGTGGAGGGTCAGCTCCAGAGGAGAGACACTGATGTGAGGAGAGAGCACAGAGACCCCTCCTCCAGCTGCACTGCTCTGACCTGGACCTGACCTGTATCCAGAGCCACACACACCAGCGCACACTActgcagcatcatgctgtggagAGTGGAGAGGCTGAACTCATGTTGTTATAACTGGGCTCACCTGAACCAGACAGAATATTAAAATCCCTTCGCAGTCagaaggttttttgtttgtttgtttgtttgtttaattataagaATTTCGTATTAATTTGTGGTGAATATTACACGTCTCTATAAGACCCTCTGTTGGCCATTTAACTCTTACCGTTTATGAACTCCTCTATGATCATCATATGCCATACTATACAGCACAGCTGAACTCCAGTGTGGACAGTAGTGGATGGACGGGAAATTACTGTGGCCCCCGCAAGATCGGAGCACGCACTGTCCACAGCACTGAACCGTCACGTCCCTGTACGTCAAAGCCAAGGACGTCAGCCATCGGCGTGAACATGAGCGCGGCCAGCGCCTTCTCTAAGCGCAACTGCAATGAACAGAAAATGGGCTCTCAGGCTGCTCCTGGCTGTGACGCTGTTGAGAGtctccTCAGATCCTGTCTCAGTGTCAGTGAGAGTCGGGGACTTTGTCACTCTGCCCTGTGATGGATCAGCCTACAGAGGGACTCCTATAGAGCAGCTCTACATTAAGTGGCAGACAGTGGATCAGGATGTCTGTGAGTTCAGTGGAAGTAGACTGTACCCCGGTCCTGGGTTTGAGAATAGGACTGAGTTTCCCCTGGAGAGGATCAGACAGGGGGACTTCTCTCTGACCTTCCAGCACACACTGTTCACTGATGAAGAGATATATGAGTGTCTCTGTGAGGGAGATGCAAACCAAGCAGTACATCTTGGGAAGGTTGATCTCACCATCACAGGCCGTGAGGAGAGCAGCTCTCTCTCCTATGGGCAGCCCCTGACCCTCCGTCTGTACAGCAGGGCAGCTGTGACAGTGTGGTTTAACCCTGCGGGCGCTGGAGCCTCTCTCCCAGTGTGTGCTGTAGAGGGCGGCACTGTGACCCCTGACCCTGCCTATGGGTCCCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGGCTCCTACACAGTGCTGGACTCCCAGAGCAGGACCATCAGCACTGTGAATGTCACTGTGACAGCTCCAGACTCTCGTGACTCCACAGGGCTGGTGATCGGGCTGGTGATCGtactgctggtgctgctggtgCTGGGGGCTGCTGGGTGTtactggaggaggaggaggaagagagagttTCACTCCGTCAGCTCTGACCCCCCGACAGCAGAGCAGAACGACATGGCAGAGTTGGACAGAAAAGAGGGGTCTGGACACACTGAGTCTGCTCTCTCTGGACAGGGCTGA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137017 lncRNA downstream 19707 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA downstream 19707 3586596 ~ 3655123 (-) True G109439
TU137003 lncRNA downstream 112886 3548614 ~ 3561944 (-) True G109432
TU136854 lncRNA downstream 241560 3340118 ~ 3433270 (-) True G109322
TU136866 lncRNA downstream 305282 3367197 ~ 3369548 (-) True G109334
TU137050 lncRNA upstream 20468 3698885 ~ 3714779 (-) False AMCG00006390
TU137060 lncRNA upstream 51625 3730042 ~ 3800123 (-) False AMCG00006398
TU137079 lncRNA upstream 127239 3805656 ~ 3807787 (-) True G109472
TU137095 lncRNA upstream 148093 3826510 ~ 3834423 (-) True G109483
TU137130 lncRNA upstream 188303 3866720 ~ 3867041 (-) True G109514
AMCG00006382 mRNA downstream 109413 3564229 ~ 3565417 (-) True AMCG00006382
AMCG00006381 mRNA downstream 150811 3515708 ~ 3524019 (-) True AMCG00006381
AMCG00006380 mRNA downstream 159622 3506311 ~ 3515208 (-) True AMCG00006380
AMCG00006377 mRNA downstream 195322 3475991 ~ 3479508 (-) True AMCG00006377
AMCG00006376 mRNA downstream 222651 3439511 ~ 3452179 (-) True AMCG00006376
AMCG00006390 mRNA upstream 35335 3713752 ~ 3728519 (-) True AMCG00006390
AMCG00006391 mRNA upstream 56874 3735291 ~ 3742281 (-) True AMCG00006391
AMCG00006401 mRNA upstream 97649 3776066 ~ 3778504 (-) True AMCG00006401
AMCG00006398 mRNA upstream 105225 3783642 ~ 3815517 (-) True AMCG00006398
AMCG00006399 mRNA upstream 144498 3822915 ~ 3823973 (-) True AMCG00006399
TU136502 other downstream 1344839 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1544575 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1650687 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1792993 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 1949982 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 486517 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2335687 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3106896 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3399972 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 5043971 8722388 ~ 8724352 (-) True G110507

Expression Profile