RNA id: AMCG00006389


Basic Information

Item Value
RNA id AMCG00006389
length 1680
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00006389
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3749003 ~ 3763628 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTGAAGTACAGGGGAGGAAAGGAATTTACTCATCATCGCCgggtttatgtatttactgttacagttcattgcatttatataaattgtgCTTTTTAGACACAAGCAGCCAGACGAGGACCGAGACGTAGcgaatagacagacagacaacgAAACTTGAGTCGCCGCTGTGagttataaagaaataaaataataactgtctAAATTAATTCCCGTCATCGAAATGACTTAATGCTGTTGGTGTgatataaatgaaaacagcacATATTATAACTTATTTGGTACGCTTACACGTTTTTATCCGGTGTTTTATTGTGGTTTGCTGATgatacattattatgattaatggATTATTCTAAATAACTATTGTAATCATTTTATCCGTGGGACGCAGGAAGTGAGACGCTACCGTGTCGAGGTCGTCGGGTTCAATcgttcatgtgtgtgttttgtgcaaaAAGATGTTTTCCTTAAACCATTATAGTCTATTGCTCTTTGACACAAATGCTCAATTCAATTTGCTTAACTAAAAGTCGCAATGTTTGAGCATAGCCTATAGAAACCAGAGACACCATTAAAACGGTGTCTAAAATGagtgaataaaataatctacaTACACTGATTCTCTGAAGagcaaagggaaattaaaataaaaagAGCTCCCAGCACAATGGCCCAGTGTGTTGTCCTGGTCTGGATTCTCACAGTGTGGCTTGATAGTACAGCTCGTGTCTCAGTGTCAGTTGGAGACTCTGTCACTCTGCCCTGTAATGGGTCAGCCTGCAGAGAAATTCCTGAGGAGCAGCTATACATTGTGTgggagacagaaaaacagcaagTCTGTGAGGTCAGTGGAGGGAGACTCAACACCAGCATCGGCTTTGAGAACAGAGCTGAGATTCCCTTGGAGAGGATCAGACAGGGGGACTTCTCCCTGACCATTAACCACACACTGTTCACTGATGAAGAGATGTATGAGTGTCGCTGTctgggagagaagaaaaatatgtttttcattggaAATGTTCATCTCATCATCACAAGCCATGAGGAGAGCAGCTCTGTCTCCTATGGGCAGCCCCTGAGCCTCCGTCTGTACAGCAGGGCAGCTGTGACAGTGTGGTTTAACCCTGCGGGCGCTGGAGCCTCTCTCCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGTGCCTCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGAACTTCACTGACCAGGGCTCCTACACAGTGCTGGACTCCCAGAGCAGGACCATCAGCACTGTGGCCGTCACTGTGACAGCTCACAGAGACGCCCTCACGGTGCCGTCTGGAGCCTCACTGTCTCTCCCGCTCTACTCTCCTGGGCCGGTGGaggtgctgtttgctgctgcagaAGAGGGAgcctgtgtctcagtgtgctcTGTGGAGAGGGGCGCAGCGAGCCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCGGTGCAGAACGGCTCTCTGACCCTGCGATCACTCACAGCAGCTGACCAGGGAAACTACACAGTGAGGGAGTCTGGGAACAACCGCACCATCAGCACCATCTCTTTATCAAAACCTGTGTGCAGCTGTACTACTTTAAACCCTGTTTCTCGAGGTGGGATTCACACACGCTTTCAGCAT

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136981 lncRNA upstream 18163 3729887 ~ 3730840 (+) True G109412
TU136971 lncRNA upstream 34224 3699108 ~ 3714779 (+) True G109405
TU136939 lncRNA upstream 127207 3618246 ~ 3621796 (+) False AMCG00006379
TU136956 lncRNA upstream 172847 3574710 ~ 3576156 (+) False AMCG00006379
TU136937 lncRNA upstream 200015 3548614 ~ 3548988 (+) True G109389
TU136961 lncRNA downstream 8921 3772549 ~ 3774544 (+) True G109396
TU137110 lncRNA downstream 100857 3864485 ~ 3864732 (+) False AMCG00006393
TU137140 lncRNA downstream 146333 3909961 ~ 3911048 (+) True G109523
TU137147 lncRNA downstream 172352 3935980 ~ 3936902 (+) True G109530
TU137149 lncRNA downstream 180141 3943769 ~ 3943994 (+) True G109532
AMCG00006386 mRNA upstream 80072 3653239 ~ 3668931 (+) True AMCG00006386
AMCG00006387 mRNA upstream 100092 3638162 ~ 3648911 (+) True AMCG00006387
AMCG00006384 mRNA upstream 116882 3623947 ~ 3632121 (+) True AMCG00006384
AMCG00006385 mRNA upstream 136245 3599253 ~ 3612758 (+) True AMCG00006385
AMCG00006383 mRNA upstream 152150 3585455 ~ 3596853 (+) True AMCG00006383
AMCG00006392 mRNA downstream 50985 3814613 ~ 3819824 (+) True AMCG00006392
AMCG00006396 mRNA downstream 59943 3823571 ~ 3824069 (+) True AMCG00006396
AMCG00006394 mRNA downstream 61940 3825568 ~ 3826749 (+) True AMCG00006394
AMCG00006395 mRNA downstream 68633 3832261 ~ 3839998 (+) True AMCG00006395
AMCG00006393 mRNA downstream 95306 3858934 ~ 3864544 (+) False AMCG00006393
TU136960 other upstream 108342 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 149306 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 175294 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 242324 3503181 ~ 3506679 (+) True G109362
TU136837 other upstream 383438 3361354 ~ 3365565 (+) False G109309
TU137096 other downstream 95645 3859273 ~ 3863270 (+) True AMCG00006393
TU137156 other downstream 199969 3963597 ~ 3963996 (+) True G109538
TU137199 other downstream 389188 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 395895 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 713306 4476934 ~ 4477570 (+) True G109714

Expression Profile