RNA id: TU137050


Basic Information

Item Value
RNA id TU137050
length 288
lncRNA type sense_over
GC content 0.61
exon number 3
gene id AMCG00006390
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3698885 ~ 3728519 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTATACATTCATCCTCACCAACAGCCTCTCTCTTCaattcttcctcctcctctctctctccatctccctctccctcctcctctctctttccatctccctctccctgtgcCCCCTGTGTGCTGAGCTGGGCGCtgctgggctgtgtgtctgcaggctgCCTCCTGCTCTCCGGCTGTCTCTGCTGCCTCTGGAGCAGGAGAGGTGGTGTTCAGTGTGTCGGGGCGCAGAGGAGTCCAGGGCAGAGCAGGAGTGAAGGAGCAGCGCAGGAGTGAAGGAGCAGCGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137017 lncRNA downstream 43762 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA downstream 43762 3586596 ~ 3655123 (-) True G109439
TU137003 lncRNA downstream 136941 3548614 ~ 3561944 (-) True G109432
TU136854 lncRNA downstream 265615 3340118 ~ 3433270 (-) True G109322
TU136866 lncRNA downstream 329337 3367197 ~ 3369548 (-) True G109334
TU137060 lncRNA upstream 15263 3730042 ~ 3800123 (-) False AMCG00006398
TU137079 lncRNA upstream 90877 3805656 ~ 3807787 (-) True G109472
TU137095 lncRNA upstream 111731 3826510 ~ 3834423 (-) True G109483
TU137130 lncRNA upstream 151941 3866720 ~ 3867041 (-) True G109514
TU137158 lncRNA upstream 261424 3976203 ~ 3976617 (-) True G109540
AMCG00006388 mRNA downstream 20468 3674830 ~ 3678417 (-) True AMCG00006388
AMCG00006382 mRNA downstream 133468 3564229 ~ 3565417 (-) True AMCG00006382
AMCG00006381 mRNA downstream 174866 3515708 ~ 3524019 (-) True AMCG00006381
AMCG00006380 mRNA downstream 183677 3506311 ~ 3515208 (-) True AMCG00006380
AMCG00006377 mRNA downstream 219377 3475991 ~ 3479508 (-) True AMCG00006377
AMCG00006391 mRNA upstream 20512 3735291 ~ 3742281 (-) True AMCG00006391
AMCG00006401 mRNA upstream 61287 3776066 ~ 3778504 (-) True AMCG00006401
AMCG00006398 mRNA upstream 68863 3783642 ~ 3815517 (-) True AMCG00006398
AMCG00006399 mRNA upstream 108136 3822915 ~ 3823973 (-) True AMCG00006399
AMCG00006397 mRNA upstream 124269 3839048 ~ 3847723 (-) True AMCG00006397
TU136502 other downstream 1368894 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1568630 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1674742 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1817048 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 1974037 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 450155 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2299325 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3070534 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3363610 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 5007609 8722388 ~ 8724352 (-) True G110507

Expression Profile